1y8z_AB : 3D-footprint complex

structure name	ALPHA-GLUCOSYLTRANSFERASE IN COMPLEX WITH UDP AND A 13-MER DNA CONTAINING A HMU BASE AT 1.9 A RESOLUTION
reference	Lariviere et al. J.Mol.Biol. 352 139 2005
source	Enterobacteria phage T4
experiment	X-ray (resolution=1.90, R-factor=?)
structural superfamily	UDP-Glycosyltransferase/glycogen phosphorylase;
reference complex	1y8z_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1y8z_A interface=46,120,196,197,226,228,229,230,231,232,234, gsmricifmargleggvtkfsleqrdwfiknghevtlvyakdksfTrtsshdhksfsipvilakeydkalklvndcdiliinsvpatsvqeatinnykklldnikpsirvvvyqhdhsvLslrrnlgleetvrradvifshsdngdfnkvlmkewypaptvynfqppmdivkvrstywkdvseinmninrwigrtTTwkgfyqmfdfhekflkpagkstvmegleRsPAFIAiKekgipyeyygnreidkmnlapnqpaqildyinsemlermsksgfgyqlsklnqkylqrsleythlelgacgtipvfwkstgenlkfrvdntpltshdsgiiwfdendmestferikelssdralydrerekayeflyqhqdssfcfkeqfdiitk > 1y8z_B interface=120,179,209,210,211,214, gsmricifmargleggvtkfsleqrdwfiknghevtlvyakdksftrtsshdhksfsipvilakeydkalklvndcdiliinsvpatsvqeatinnykklldnikpsirvvvyqhdhsvLslrrnlgleetvrradvifshsvynfqppmdivkvrstywkdvseinmninrwigrttTwkgfyqmfdfhekflkpagkstvmeglerSPAfiAikekgipyeyygnreidkmnlapnqpaqildyinsemlermsksgfgyqlsklnqkylqrsleythlelgacgtipvfwkstgenlkfrvdntpltshdsgiiwfdendmestferikelssdralydrerekayeflyqhqdssfcfkeqfdiitk
interface signature	TLTTRPAFIAK/LTSPAA

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# IC=5.766 IC/col=0.721 n_of_columns=8

A |   0  24  54  13  24   0   0  96
C |  96  24  13  13  24   0   0   0
G |   0  24  16  16  24   0  96   0
T |   0  24  13  54  24  96   0   0

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updated Fri Dec 13 11:37:44 2024