1ya6_AB : 3D-footprint complex

structure name	ALPHA-GLUCOSYLTRANSFERASE IN COMPLEX WITH UDP AND A 13-MER DNA CONTAINING A CENTRAL A:G MISMATCH
reference	Lariviere et al. J.Mol.Biol. 352 139 2005
source	Enterobacteria phage T4
experiment	X-ray (resolution=2.40, R-factor=?)
structural superfamily	UDP-Glycosyltransferase/glycogen phosphorylase;
reference complex	1y8z_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1ya6_A interface=46,186,187,215,216,217,218,219,220,221,222,224,254, smricifmarglegcgvtkfsleqrdwfiknghevtlvyakdksfTrtsshdhksfsipvilakeydkalklvndcdiliinsvpatsvqeatinnykklldnikpsirvvvyqhdhsvlslrrnlgleetvrradvifshsdngdfnptvynfqppmdivkvrstywkdvseinmninrwigrtTTwkgfyqmfdfhekflkpagkstvmeglERSPAFIAiKekgipyeyygnreidkmnlapnqpaqildCyinsemlermsksgfgyqlsklnqkylqrsleythlelgacgtipvfwkstgenlkfrvdntpltshdsgiiwfdendmestferikelssdralydrerekayeflyqhqdssfcfkeqfdiitk > 1ya6_B interface=122,184,214,215,216,219, mgsmricifmarglegcgvtkfsleqrdwfiknghevtlvyakdksftrtsshdhksfsipvilakeydkalklvndcdiliinsvpatsvqeatinnykklldnikpsirvvvyqhdhsvLslrrnlgleetvrradvifshsdptvynfqppmdivkvrstywkdvseinmninrwigrttTwkgfyqmfdfhekflkpagkstvmeglerSPAfiAikekgipyeyygnreidkmnlapnqpaqildcyinsemlermsksgfgyqlsklnqkylqrsleythlelgacgtipvfwkstgenlkfrvdntpltshdsgiiwfdendmestferikelssdralydrerekayeflyqhqdssfcfkeqfdiitk
interface signature	TTTERSPAFIAKC/LTSPAA

Estimated binding specificities ?

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# IC=5.928 IC/col=0.659 n_of_columns=9

specificity:

A |  18   0  96  96  24  54  18  24   0
C |  48   0   0   0  24  12  12  24   0
G |  18   0   0   0  24  18  12  24  96
T |  12  96   0   0  24  12  54  24   0

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updated Fri Dec 13 11:37:57 2024