1ytf_AC : 3D-footprint complex

structure name	YEAST TFIIA/TBP/DNA COMPLEX
reference	Richmond et al. Nature 381 127 1996
source	SACCHAROMYCES CEREVISIAE
experiment	X-ray (resolution=2.50, R-factor=?)
structural superfamily	Transcription factor IIA TFIIA, beta-barrel domain;TATA-box binding protein-like;
reference complex	1nh2_C 1ytb_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1ytf_A interface=9,11,39,54,56,62,64,99,101,130,131,145,147,153,155, sgivptlqNiVatvtlgcrldlktvalharnaeynpkrFaavimrirepkttaLiFasgkmVvTgakseddsklasrkyariiqkigfaakftdfkiqNiVgscdvkfpirleglafshgtfssyepelFPgliyrmvkpkivlLiFvsgkiVlTgakqreeiyqafeaiypvlsefrkm > 1ytf_C interface= enlmlclyDkVtrtkarwkcslkdgvvtinrndytfqkAqveaewv
interface signature	NVFLFVTNVFPLFVT/DVA

Estimated binding specificities ?

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# IC=10.404 IC/col=1.040 n_of_columns=10

specificity:

A |   0  96   0  96   8  96  80  72  96   8
C |   0   0   0   0   8   0   8   8   0  72
G |   0   0   0   0   8   0   8   8   0   8
T |  96   0  96   0  72   0   0   8   0   8

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updated Mon Sep 9 14:38:25 2024