1ytf_AC : 3D-footprint complex

structure name	YEAST TFIIA/TBP/DNA COMPLEX
reference	Richmond et al. Nature 381 127 1996
source	SACCHAROMYCES CEREVISIAE
experiment	X-ray (resolution=2.50, R-factor=?)
structural superfamily	Transcription factor IIA TFIIA, beta-barrel domain;TATA-box binding protein-like;
reference complex	1nh2_C 1ytb_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1ytf_A interface=9,11,39,54,56,62,64,99,101,130,131,145,147,153,155, sgivptlqNiVatvtlgcrldlktvalharnaeynpkrFaavimrirepkttaLiFasgkmVvTgakseddsklasrkyariiqkigfaakftdfkiqNiVgscdvkfpirleglafshgtfssyepelFPgliyrmvkpkivlLiFvsgkiVlTgakqreeiyqafeaiypvlsefrkm > 1ytf_C interface= enlmlclyDkVtrtkarwkcslkdgvvtinrndytfqkAqveaewv
interface signature	NVFLFVTNVFPLFVT/DVA

Estimated binding specificities ?

readout + contact

# IC=10.404 IC/col=1.040 n_of_columns=10

specificity:

A |   8   0   8   0   0  72   0  96   0  96
C |   8   0   8   8   0   8   0   0   0   0
G |  72   0   8   8   0   8   0   0   0   0
T |   8  96  72  80  96   8  96   0  96   0

scan!

home
updated Tue Jul 29 17:14:19 2025