1zbl_AB : 3D-footprint complex

structure name	BACILLUS HALODURANS RNASE H CATALYTIC DOMAIN MUTANT D192N IN COMPLEX WITH 12-MER RNA/DNA HYBRID
reference	Gaidamakov et al. 'Cell(Cambridge,Mass.)' 121 1005 2005
source	Bacillus halodurans
experiment	X-ray (resolution=2.20, R-factor=?)
structural superfamily	Ribonuclease H-like;
reference complex	6dop_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1zbl_A interface=17,45,46,74,75, eeiiweslsvdvgsqgNpgiveykgvdtktgevlferepipigtNNmgeflaivhglrylkernsrkpiysdsQTaikwvkdkkakstlvrneetaliwklvdeaeewlnthtyetpilkwqtdkwgeikany > 1zbl_B interface=17,45,46,74,75, eeiiweslsvdvgsqgNpgiveykgvdtktgevlferepipigtNNmgeflaivhglrylkernsrkpiysdsQTaikwvkdkkakstlvrneetaliwklvdeaeewlnthtyetpilkwqtdkwgeikany
interface signature	NNNQT/NNNQT

Estimated binding specificities ?

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# IC=6.292 IC/col=0.629 n_of_columns=10

specificity:

A |  73   0   7  24  24  24   0   0   7   7
C |   7   0  73  24  24  24   0   0   7  73
G |   9   0   7  24  24  24   0  96   7   9
T |   7  96   9  24  24  24  96   0  75   7

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updated Fri Dec 13 11:40:46 2024