1zg5_AB : 3D-footprint complex

structure name	NARL COMPLEXED TO NARG-89 PROMOTER PALINDROMIC TAIL-TO-TAIL DNA SITE
reference	Kaczor-Grzeskowiak et al.
source	Escherichia coli
experiment	X-ray (resolution=2.30, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 1zg5_A interface=35,36,38,39,40,42, rdvnqltprerdilkliaqglpnkmiarrlditeSTvKVHvKhmlkkmklksrveaavwvhqerif > 1zg5_B interface=35,36,38,39,40,42, rdvnqltprerdilkliaqglpnkmiarrlditeSTvKVHvKhmlkkmklksrveaavwvhqerif
interface signature	STKVHK/STKVHK

Estimated binding specificities ?

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# IC=12.335 IC/col=0.771 n_of_columns=16

specificity:

A |   0  88  24   0   7   0  21  24  24  51   0  24   0   0   6  96
C |   0   3  68  96  71  96  11  24  24  19   0  24   0   0  26   0
G |   0   1   1   0   1   0   5  24  24   9  96  24  96  96  13   0
T |  96   4   3   0  17   0  59  24  24  17   0  24   0   0  51   0

scan!

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updated Fri Dec 13 11:41:12 2024