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structure name4 CRYSTAL STRUCTURES OF CAP-DNA WITH ALL BASE-PAIR SUBSTITUTIONS AT POSITION 6, CAP-[6G;17C]ICAP38 DNA
(Catabolite gene activator)
referenceBerman et al. J.Mol.Biol. 357 173 2006
sourceEscherichia coli
experimentX-ray (resolution=2.80, R-factor=0.285)
structural superfamilycAMP-binding domain-like;"Winged helix" DNA-binding domain;
sequence familyCyclic nucleotidebinding domain; Bacterial regulatory proteins, crp famil;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSRER

Estimated binding specificities ?

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# IC=4.250 IC/col=0.850 n_of_columns=5 specificity:   
A |  12   0  12   0  96
C |  12   0  12   0   0
G |  12  96  60  84   0
T |  60   0  12  12   0
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updated Mon Dec 16 19:19:00 2024