2cdm_A : 3D-footprint complex

structure name	THE STRUCTURE OF TRWC COMPLEXED WITH A 27-MER DNA COMPRISING THE RECOGNITION HAIRPIN AND THE CLEAVAGE SITE
reference	Perez-Luque et al.
experiment	X-ray (resolution=2.70, R-factor=0.207)
structural superfamily	Origin of replication-binding domain, RBD-like;
sequence family	TrwC relaxase;
multimeric complexes	4pcb_AC
reference complex	1omh_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2cdm_A interface=1,2,3,4,5,6,14,60,62,68,72,74,76,78,115,117,146,169,170,173,174,176,177,203,205,223,226,242,246,249,253, MLSHMVltrqdigRaasfyasewqgkgaeelglsgevdskrfrellagnigeghrimrsAtRqdskeRiglDlTfSaPksvslqalvagdaeiikahdravartleqaearaqaRqKiqgktriettgnlvigkfrhetsrerdpQlhthavilnmtkrsdgqwralkNDeiVKaTRylgavynaelahelqklgyqlrygkDgNfdlahidrqqiegfskrTeqIaewyaargldpnsvsLeqkQaaKvlsRakktsvdrealraewqatakelgidfs
interface signature	MLSHMVRARRDTSPRKQNDVKTRDNTILQKR

Estimated binding specificities ?

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# IC=19.269 IC/col=0.803 n_of_columns=24

specificity:

A |  12  19  88  14  21  24  24  31  24  19   0   0   0  12   0   0  96   0   0   0   0   0   0  96
C |  12  38   2  54  31  24  24  23  24  19   0   0   0  60   0   0   0   0   0   0   0  96   0   0
G |  60  19   4  14  21  24  24  21  24  38  96   0  96  12  96   0   0   0   0  96   0   0   0   0
T |  12  20   2  14  23  24  24  21  24  20   0  96   0  12   0  96   0  96  96   0  96   0  96   0

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updated Sun Jun 28 05:26:54 2026