2dpd_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE REPLICATION TERMINATION PROTEIN IN COMPLEX WITH A PSEUDOSYMMETRIC B-SITE
reference	Wilce et al. 'to ? ? ?
source	Bacillus subtilis
experiment	X-ray (resolution=3.17, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2dpd_A interface=28,46,47,48,49,51,52, stgflvkqraflklymitmteqerlygLkllevlrsefkeigfkpNHTEvYRslhellddgilkqikvkkegaklqevvlyqfkdyeaaklykkqlkveldrskkliekalsdnf > 2dpd_B interface=30,48,49,50,53,54,78, rsstgflvkqraflklymitmteqerlygLkllevlrsefkeigfkpNHTevYRslhellddgilkqikvkkegaklQevvlyqfkdyeaaklykkqlkveldrskkliekalsdnf
interface signature	LNHTEYR/LNHTYRQ

Estimated binding specificities ?

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# IC=12.015 IC/col=0.858 n_of_columns=14

specificity:

A |   0  62  78   0  96  24  24  58   0   0   0   4   0  87
C |   0   8  10  96   0  24  24   8   0   0   0  13  96   4
G |  96  13   4   0   0  24  24  17   0  96   0  17   0   4
T |   0  13   4   0   0  24  24  13  96   0  96  62   0   1

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updated Fri Dec 13 11:54:32 2024