2dpd_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE REPLICATION TERMINATION PROTEIN IN COMPLEX WITH A PSEUDOSYMMETRIC B-SITE
reference	Wilce et al. 'to ? ? ?
source	Bacillus subtilis
experiment	X-ray (resolution=3.17, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	1f4k_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2dpd_A interface=28,46,47,48,49,51,52, stgflvkqraflklymitmteqerlygLkllevlrsefkeigfkpNHTEvYRslhellddgilkqikvkkegaklqevvlyqfkdyeaaklykkqlkveldrskkliekalsdnf > 2dpd_B interface=30,48,49,50,53,54,78, rsstgflvkqraflklymitmteqerlygLkllevlrsefkeigfkpNHTevYRslhellddgilkqikvkkegaklQevvlyqfkdyeaaklykkqlkveldrskkliekalsdnf
interface signature	LNHTEYR/LNHTYRQ

Estimated binding specificities ?

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# IC=12.179 IC/col=0.812 n_of_columns=15

specificity:

A |   6   0  64  96   0  96  24  24  24   0   0   6   7   0  69
C |   5   0  12   0  96   0  24  24  24   0   0   5  10  96   5
G |   5  96  10   0   0   0  24  24  24   0  96   5  10   0  17
T |  80   0  10   0   0   0  24  24  24  96   0  80  69   0   5

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updated Wed Jun 24 12:25:55 2026