2dpd_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE REPLICATION TERMINATION PROTEIN IN COMPLEX WITH A PSEUDOSYMMETRIC B-SITE
reference	Wilce et al. 'to ? ? ?
source	Bacillus subtilis
experiment	X-ray (resolution=3.17, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	1f4k_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2dpd_A interface=28,46,47,48,49,51,52, stgflvkqraflklymitmteqerlygLkllevlrsefkeigfkpNHTEvYRslhellddgilkqikvkkegaklqevvlyqfkdyeaaklykkqlkveldrskkliekalsdnf > 2dpd_B interface=30,48,49,50,53,54,78, rsstgflvkqraflklymitmteqerlygLkllevlrsefkeigfkpNHTevYRslhellddgilkqikvkkegaklQevvlyqfkdyeaaklykkqlkveldrskkliekalsdnf
interface signature	LNHTEYR/LNHTYRQ

Estimated binding specificities ?

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# IC=12.409 IC/col=0.827 n_of_columns=15

specificity:

A |   5   0  58  96   0  96  24  24  24   0   0   5  10   0  75
C |   6   0  10   0  96   0  24  24  24   0   0   6  10  96   5
G |   0  96  18   0   0   0  24  24  24   0  96   5  10   0  16
T |  85   0  10   0   0   0  24  24  24  96   0  80  66   0   0

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updated Mon Jan 5 00:24:26 2026