2dpd_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE REPLICATION TERMINATION PROTEIN IN COMPLEX WITH A PSEUDOSYMMETRIC B-SITE
reference	Wilce et al. 'to ? ? ?
source	Bacillus subtilis
experiment	X-ray (resolution=3.17, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	1f4k_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2dpd_A interface=28,46,47,48,49,51,52, stgflvkqraflklymitmteqerlygLkllevlrsefkeigfkpNHTEvYRslhellddgilkqikvkkegaklqevvlyqfkdyeaaklykkqlkveldrskkliekalsdnf > 2dpd_B interface=30,48,49,50,53,54,78, rsstgflvkqraflklymitmteqerlygLkllevlrsefkeigfkpNHTevYRslhellddgilkqikvkkegaklQevvlyqfkdyeaaklykkqlkveldrskkliekalsdnf
interface signature	LNHTEYR/LNHTYRQ

Estimated binding specificities ?

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# IC=11.910 IC/col=0.851 n_of_columns=14

specificity:

A |   0  54  84   0  96  24  24  44   0   0   0  24   0  90
C |   0  12   6  96   0  24  24   6   0   0   0  12  96   3
G |  96  21   3   0   0  24  24  35   0  96   0  12   0   3
T |   0   9   3   0   0  24  24  11  96   0  96  48   0   0

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updated Tue Jul 29 17:29:19 2025