structure name | SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF CHICKEN GATA-1 BOUND TO DNA, NMR, REGULARIZED MEAN STRUCTURE (ERYTHROID TRANSCRIPTION FACTOR GATA-1) |
source | GALLUS GALLUS |
experiment | NMR |
structural superfamily | Glucocorticoid receptor-like DNA-binding domain; |
sequence family | GATA zinc finger; |
redundant complexes | 3gat 1gau 1gat |
reference complex | 1gat_A |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | TLRNLLK |
Estimated binding specificities ?
readout + contact |
A | 78 4 57 12 42 C | 6 4 13 12 18 G | 6 84 13 12 18 T | 6 4 13 60 18scan! |
Related DNA sequences reported in the literature ?
site | source | matches (E-value) |
---|---|---|
term: GATA-1 | ||
AGATAA | PubMed | 2gat_A(1.19e-07), 3gat_A(1.24e-07), 1gat_A(1.20e-07), ... (total=4) |
AGATCT | PubMed | 2gat_A(3.54e-04), 3gat_A(3.54e-04), 1gat_A(3.56e-04), ... (total=4) |
TTATCT | PubMed | 2gat_A(1.19e-07), 3gat_A(1.24e-07), 1gat_A(1.20e-07), ... (total=4) |
GATAG | PubMed | 2gat_A(1.34e-04), 3gat_A(1.38e-04), 1gat_A(1.35e-04), ... (total=4) |
CGATA | PubMed | 2gat_A(1.34e-04), 3gat_A(1.38e-04), 1gat_A(1.35e-04), ... (total=4) |
TGATAG | PubMed | 2gat_A(3.54e-04), 3gat_A(3.65e-04), 1gat_A(3.56e-04), ... (total=4) |
TGATAA | PubMed | 2gat_A(3.54e-04), 3gat_A(3.65e-04), 1gat_A(3.56e-04), ... (total=4) |
home
updated Thu Sep 12 16:08:04 2024