| structure name | SOLUTION STRUCTURE OF THE BRINKER DNA BINDING DOMAIN IN COMPLEX WITH THE OMB ENHANCER (BRINKER CG9653-PA) |
| source | DROSOPHILA MELANOGASTER |
| experiment | NMR |
| structural superfamily | Homeodomain-like; |
| sequence family | Brinker DNAbinding domain; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | RHRRQQK |
Estimated binding specificities ?
readout + contact |  |
A | 9 0 0 96 0 0 9 11 C | 9 0 0 0 96 0 69 67 G | 9 0 96 0 0 96 9 9 T | 69 96 0 0 0 0 9 9scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: BRINKER | ||
| TGGCGC | PubMed | 2glo_A(1.66e-04) |
Dendrogram of similar interfaces ?
matrix format--RTQG--------PTSGTCSTTC---- L +-----------------1hlv_A +-----------4 RT--------HGSGRGHG--RT------ L ! +-----------------1tc3_C ! RT------LC--RTPTPT---------- L +-6 +--6nsn_B ! ! +--1 --------------KG------------ ! ! +---------------2 +--6wpa_A ! ! ! ! ------------ATYA------------ L ! +-------5 +-----6en8_C +-7 ! ------------TGKG------------ L ! ! ! +---------------4pxi_B ! ! +-----3 ----------PTTC-------------- L +-8 ! +---------------6c31_A ! ! ! ------RALTPTDCHGTCTCLTHT---- L ! ! +-----------------------------1j1v_A --9 ! --------LTETTTRAECRCRCQC---- L ! +-----------------------------3n97_A ! --------------DCNA--NA--NTST L +-----------------------------3zqc_A |
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updated Fri Sep 13 16:18:55 2024