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structure nameSOLUTION STRUCTURE OF THE BRINKER DNA BINDING DOMAIN IN COMPLEX WITH THE OMB ENHANCER
(BRINKER CG9653-PA)
sourceDROSOPHILA MELANOGASTER
experimentNMR
structural superfamilyHomeodomain-like;
sequence familyBrinker DNAbinding domain;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRHRRQQK

Estimated binding specificities ?

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# IC=8.004 IC/col=1.001 n_of_columns=8 specificity:   
A |   9   9   0   0   0   0  96  69
C |   9  11  96   0   0  96   0   9
G |  67  67   0  96   0   0   0   9
T |  11   9   0   0  96   0   0   9
scan!

Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: BRINKER
TGGCGCPubMed2glo_A(1.66e-04)

Dendrogram of similar interfaces ?

matrix format
  
  --RTQG--------PTSGTCSTTC----   L                     +-----------------1hlv_A    
                                           +-----------4 
  RT--------HGSGRGHG--RT------   L         !           +-----------------1tc3_C    
                                           ! 
  RT------LC--RTPTPT----------   L       +-6                          +--6nsn_B    
                                         ! !                       +--1 
  --------------KG------------           ! !       +---------------2  +--6wpa_A    
                                         ! !       !               ! 
  ------------ATYA------------   L       ! +-------5               +-----6en8_C    
                                       +-7         ! 
  ------------TGKG------------   L     ! !         !     +---------------4pxi_B    
                                       ! !         +-----3 
  ----------PTTC--------------   L   +-8 !               +---------------6c31_A    
                                     ! ! ! 
  ------RALTPTDCHGTCTCLTHT----   L   ! ! +-----------------------------1j1v_A    
                                   --9 ! 
  --------LTETTTRAECRCRCQC----   L   ! +-----------------------------3n97_A    
                                     ! 
  --------------DCNA--NA--NTST   L   +-----------------------------3zqc_A    
                                   

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updated Tue Dec 17 22:45:07 2024