2hzv_ABCD : 3D-footprint complex

structure name	NIKR-OPERATOR DNA COMPLEX
reference	Schreiter et al. Proc.Natl.Acad.Sci.Usa 103 13676 2006
source	Escherichia coli
experiment	X-ray (resolution=3.10, R-factor=?)
structural superfamily	ACT-like;Ribbon-helix-helix;
reference complex	2hzv_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2hzv_A interface=3,5,7, mqRvTiTldddlletldslsqrrgynnrseairdilrsalaqeatqqhgtqgfavlsyvyehekrdlasrivstqhhhhdlsvatlhvhinhddcleiavlkgdmgdvqhfaddviaqrgvrhghlqclpk > 2hzv_B interface=3,5,7, mqRvTiTldddlletldslsqrrgynnrseairdilrsalaqeatqqhgtqgfavlsyvyehekrdlasrivstqhhhhdlsvatlhvhinhddcleiavlkgdmgdvqhfaddviaqrgvrhghlqclpk > 2hzv_C interface=3,5,7, mqRvTiTldddlletldslsqrrgynnrseairdilrsalaqeatqqhgtqgfavlsyvyehekrdlasrivstqhhhhdlsvatlhvhinhddcleiavlkgdmgdvqhfaddviaqrgvrhghlqclpk > 2hzv_D interface=3,5,7, mqRvTiTldddlletldslsqrrgynnrseairdilrsalaqeatqqhgtqgfavlsyvyehekrdlasrivstqhhhhdlsvatlhvhinhddcleiavlkgdmgdvqhfaddviaqrgvrhghlqclpk
interface signature	RTT/RTT/RTT/RTT

Estimated binding specificities ?

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# IC=13.738 IC/col=0.491 n_of_columns=28

specificity:

A |   0   0   0   0   0  96  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0  96  60  96   0
C |   0   0  12  12   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0  96   0  12   0  96
G |  96   0  24   0  96   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0   0  12   0   0
T |   0  96  60  84   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  96   0   0  12   0   0

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updated Mon Sep 9 15:11:13 2024