2hzv_EFGH : 3D-footprint complex

structure name	NIKR-OPERATOR DNA COMPLEX
reference	Schreiter et al. Proc.Natl.Acad.Sci.Usa 103 13676 2006
source	Escherichia coli
experiment	X-ray (resolution=3.10, R-factor=?)
structural superfamily	ACT-like;Ribbon-helix-helix;
reference complex	2hzv_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2hzv_E interface=3,5,7, mqRvTiTldddlletldslsqrrgynnrseairdilrsalaqeatqqhgtqgfavlsyvyehekrdlasrivstqhhhhdlsvatlhvhinhddcleiavlkgdmgdvqhfaddviaqrgvrhghlqclpk > 2hzv_F interface=3,5,7, mqRvTiTldddlletldslsqrrgynnrseairdilrsalaqeatqqhgtqgfavlsyvyehekrdlasrivstqhhhhdlsvatlhvhinhddcleiavlkgdmgdvqhfaddviaqrgvrhghlqclpk > 2hzv_G interface=3,5,7, mqRvTiTldddlletldslsqrrgynnrseairdilrsalaqeatqqhgtqgfavlsyvyehekrdlasrivstqhhhhdlsvatlhvhinhddcleiavlkgdmgdvqhfaddviaqrgvrhghlqclpk > 2hzv_H interface=3,5,7, mqRvTiTldddlletldslsqrrgynnrseairdilrsalaqeatqqhgtqgfavlsyvyehekrdlasrivstqhhhhdlsvatlhvhinhddcleiavlkgdmgdvqhfaddviaqrgvrhghlqclpk
interface signature	RTT/RTT/RTT/RTT

Estimated binding specificities ?

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# IC=16.426 IC/col=0.566 n_of_columns=29

specificity:

A |  54   0   0  96   0   0  96  13  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0  96   0  96   0
C |  16   0   0   0   0   0   0  54  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0  96   0   0   0  96
G |  13  96   0   0   0  96   0  16  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0   0   0   0   0
T |  13   0  96   0  96   0   0  13  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  96   0   0  96   0   0

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updated Fri Dec 13 12:14:28 2024