2is2_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF UVRD-DNA BINARY COMPLEX
reference	Lee et al. 'Cell(Cambridge,Mass.)' 127 1349 2006
source	Escherichia coli
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	?;P-loop containing nucleoside triphosphate hydrolases;
reference complex	2is6_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2is2_A interface=420,452,617, dvsylldslndkqreavaaprsnllvlagagsgktrvlvhriawlmsvencspysimavtftnkaaaemrhrigqlmgtsqggmwvgtfhglahrllrahhmdanlpqdfqildsedqlrllkrlikamnldekqwpprqamwyinsqkdeglrphhiqsygnpveqtwqkvyqayqeacdraglvdfaelllrahelwlnkphilqhyrerftnilvdefqdtnniqyawirllagdtgkvmivgdddqsiygwrgaqveniqrflndfpgaetirleqnyrstsnilsaanaliennngrlgkklwtdgadgepislycafneldearfvvnriktwqdnggalaecailyrsnaqsrvleeallqasmpyriyggmrfferqeikdalsylrlivnrnddaafervvntptrgigdRtldvvrqtsrdrqltlwqacrellqekalagRaasalqrfmelidalaqetadmplhvqtdrvikdsglrtmyeqekgekgqtrienleelvtatrqfsydedlmplqaflshaaleagegqadtwqdavqlmtlhsakglefpqvfivgmeegmfpsqmsldeggrleeerrlayvgvtramqkltltyaetrrlYgkevyhrpsrfigelpeecveevrl > 2is2_B interface=420,452,617, dvsylldslndkqreavaaprsnllvlagagsgktrvlvhriawlmsvencspysimavtftnkaaaemrhrigqlmgtsqggmwvgtfhglahrllrahhmdanlpqdfqildsedqlrllkrlikamnldekqwpprqamwyinsqkdeglrphhiqsygnpveqtwqkvyqayqeacdraglvdfaelllrahelwlnkphilqhyrerftnilvdefqdtnniqyawirllagdtgkvmivgdddqsiygwrgaqveniqrflndfpgaetirleqnyrstsnilsaanaliennngrlgkklwtdgadgepislycafneldearfvvnriktwqdnggalaecailyrsnaqsrvleeallqasmpyriyggmrfferqeikdalsylrlivnrnddaafervvntptrgigdRtldvvrqtsrdrqltlwqacrellqekalagRaasalqrfmelidalaqetadmplhvqtdrvikdsglrtmyeqekgekgqtrienleelvtatrqfsydedlmplqaflshaaleagegqadtwqdavqlmtlhsakglefpqvfivgmeegmfpsqmsldeggrleeerrlayvgvtramqkltltyaetrrlYgkevyhrpsrfigelpeecveevrl
interface signature	RRY/RRY

Estimated binding specificities ?

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# IC=8.431 IC/col=0.301 n_of_columns=28

specificity:

A |   0  24  24  24  24  24  24  24  24  24  54   0  24   0   0  24   0  13  24  24  24  24  24  24  24  24  24   0
C |  96  24  24  24  24  24  24  24  24  24  16  96  24  96   0  24   0  13  24  24  24  24  24  24  24  24  24   0
G |   0  24  24  24  24  24  24  24  24  24  13   0  24   0  96  24  96  16  24  24  24  24  24  24  24  24  24  96
T |   0  24  24  24  24  24  24  24  24  24  13   0  24   0   0  24   0  54  24  24  24  24  24  24  24  24  24   0

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updated Mon Sep 9 15:14:14 2024