2ivk_BC : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE PERIPLASMIC ENDONUCLEASE VVN COMPLEXED WITH A 16-BP DNA
reference	Doudeva et al. 'Nucleic 35 584 2007
source	VIBRIO VULNIFICUS
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	His-Me finger endonucleases;
reference complex	2ivk_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2ivk_B interface=54,57,82,113, appssfsaakqqavkiyqdhpisfycgcdiewqgkkgipnletcgyqvrkqqtRasRieweavvpawqfghhrqcwqkggrKncskndqqfrlmeadlhnltpaigevngdrSnfnfsqwngvdgvsygrcemqvnfkqrkvmppdrargsiartylymsqeygfqlskqqqqlmqawnksypvdewectrddriakiqgnhnpfvqqscqtq > 2ivk_C interface=51,54,82,113, appssfsaakqqavkiyqdhpisfycgcdiewqgkkgipnletcgyqvrkQqtRasrieweavvpawqfghhrqcwqkggrKncskndqqfrlmeadlhnltpaigevngdrSnfnfsqwngvdgvsygrcemqvnfkqrkvmppdrargsiartylymsqeygfqlskqqqqlmqawnksypvdewectrddriakiqgnhnpfvqqscqtq
interface signature	RRKS/QRKS

Estimated binding specificities ?

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# IC=4.007 IC/col=0.211 n_of_columns=19

specificity:

A |   0  11  24  24  24  24  24  24  24  24  24  24  24  24  24  24   9   0  69
C |  96   9  24  24  24  24  24  24  24  24  24  24  24  24  24  24  67   0   9
G |   0  67  24  24  24  24  24  24  24  24  24  24  24  24  24  24  11  96   9
T |   0   9  24  24  24  24  24  24  24  24  24  24  24  24  24  24   9   0   9

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updated Wed Jun 24 12:56:29 2026