2kek_AB : 3D-footprint complex

structure name	SOLUTION STRUCTURE OF A DIMER OF LAC REPRESSOR DNA-BINDING DOMAIN COMPLEXED TO ITS NATURAL OPERATOR O3
source	ESCHERICHIA COLI
experiment	NMR
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	1l1m_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2kek_A interface=6,7,16,17,18,21,22,56,57, mkpvtLYdvaeyagvSYQtvSRvvnqashvsaktrekveaamaelnyipnrcaqqLAgkqsl > 2kek_B interface=7,17,18,22,29,53,56,57, mkpvtlYdvaeyagvsYQtvsRvvnqasHvsaktrekveaamaelnyipnrcAqqLAgkqsl
interface signature	LYSYQSRLA/YYQRHALA

Estimated binding specificities ?

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# IC=9.939 IC/col=0.828 n_of_columns=12

specificity:

A |   0  24  24   6   5   5   0   0   5   0  96   6
C |  96  24  24   5   6  81   0  90   5  90   0  80
G |   0  24  24   5  80   5  96   0   5   1   0   5
T |   0  24  24  80   5   5   0   6  81   5   0   5

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updated Mon Sep 9 15:24:16 2024