2ntc_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF SV40 LARGE T ANTIGEN ORIGIN BINDING DOMAIN WITH DNA
reference	Bullock et al. 'Plos 5 e23 2007
source	Simian virus 40
experiment	X-ray (resolution=2.40, R-factor=?)
structural superfamily	Origin of replication-binding domain, RBD-like;
reference complex	2itl_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2ntc_A interface=21,22,23,24,73, vedpkdfpsellsflshavfSNRTlacfaiyttkekaallykkimekysvtfisrhnsynhnilffltphrhRvsainnyaqklctfsflickgvnkeylmysaltrdpfsvieeslpgglkehdfn > 2ntc_B interface=20,21,22,23,70,72, edpkdfpsellsflshavfSNRTlacfaiyttkekaallykkimekysvtfisrhnsynhnilffltphRhRvsainnyaqklctfsflickgvnkeylmysaltrdpfsvieeslpgglkehdfn
interface signature	SNRTR/SNRTRR

Estimated binding specificities ?

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# IC=14.833 IC/col=0.781 n_of_columns=19

specificity:

A |  83   5  83   4   0   0   5  24  24  24  24  24   1   0   0   0   4   0   4
C |   4   4   4   1   0  96  83  24  24  24  24  24   0   0  96  91   4  96   4
G |   5  83   4  87  96   0   4  24  24  24  24  24   4  96   0   1   4   0  83
T |   4   4   5   4   0   0   4  24  24  24  24  24  91   0   0   4  84   0   5

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updated Tue Jul 29 18:07:24 2025