2ntc_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF SV40 LARGE T ANTIGEN ORIGIN BINDING DOMAIN WITH DNA
reference	Bullock et al. 'Plos 5 e23 2007
source	Simian virus 40
experiment	X-ray (resolution=2.40, R-factor=?)
structural superfamily	Origin of replication-binding domain, RBD-like;
reference complex	2itl_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2ntc_A interface=21,22,23,24,73, vedpkdfpsellsflshavfSNRTlacfaiyttkekaallykkimekysvtfisrhnsynhnilffltphrhRvsainnyaqklctfsflickgvnkeylmysaltrdpfsvieeslpgglkehdfn > 2ntc_B interface=20,21,22,23,70,72, edpkdfpsellsflshavfSNRTlacfaiyttkekaallykkimekysvtfisrhnsynhnilffltphRhRvsainnyaqklctfsflickgvnkeylmysaltrdpfsvieeslpgglkehdfn
interface signature	SNRTR/SNRTRR

Estimated binding specificities ?

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# IC=15.267 IC/col=0.804 n_of_columns=19

specificity:

A |   4   0  84   4   0   0  96  24  24  24  24  24   4   0   0   0   4   7   4
C |  84   0   4   2   0  96   0  24  24  24  24  24   2   0  96  96   4  81   4
G |   4  96   4  86  96   0   0  24  24  24  24  24  86  96   0   0   7   4   4
T |   4   0   4   4   0   0   0  24  24  24  24  24   4   0   0   0  81   4  84

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updated Mon Sep 9 15:29:28 2024