2o6m_AB : 3D-footprint complex

structure name	H98Q MUTANT OF THE HOMING ENDONUCLEASE I-PPOI COMPLEXED WITH DNA
reference	Eastberg et al. Biochemistry 46 7215 2007
source	Physarum polycephalum
experiment	X-ray (resolution=2.30, R-factor=?)
structural superfamily	His-Me finger endonucleases;
reference complex	8vms_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2o6m_A interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctasqlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv > 2o6m_B interface=54,56,60,62,64,66,71,73,115,119, altnaqilavidsweetvgqfpvithhvplggglqgtlhcyeiplaapygvgfAkNgptRwQyKrTinqvVhRwgshtvpfllepdningktctasqlchntrchnplhlcwesLddnKgrnwcpgpnggcvhavvclrqgplygpgatvagpqqrgshfvv
interface signature	ANRQKTVRLK/ANRQKTVRLK

Estimated binding specificities ?

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# IC=20.410 IC/col=1.074 n_of_columns=19

specificity:

A |   6   0  29   0   0   2   6   4   0   0  96  89   2  84   0  96   0   6   0
C |   4   0   5  96   0  93   7  86   2   0   0   3   4   2   0   0   0  55  96
G |   7  96  60   0   0   0   2   4   0   0   0   4  88   4  91   0  96   4   0
T |  79   0   2   0  96   1  81   2  94  96   0   0   2   6   5   0   0  31   0

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updated Fri Dec 13 12:49:37 2024