2oaa_B : 3D-footprint complex

structure name	RESTRICTION ENDONUCLEASE MVAI-COGNATE DNA SUBSTRATE COMPLEX (R.MVAI)
reference	Szczepanowski et al.
source	KOCURIA VARIANS
experiment	X-ray (resolution=1.50, R-factor=0.177)
multimeric complexes	2oaa_AB
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2oaa_B interface=30,31,47,67,70,73,102,104,209,211,215,220,223,225,227,232, ksmseylnllkeaiqnvvdggwhetkrkgNTgigktfedllekeedNldapdfhdieikthetaakSllTlfTksptnprgantmlrnrygkkdeygnnilHqTvsgnrktnsnsynydfkididwesqvvrlevfdkqdimidnsvywsfdslqnqldkklkyiavisaeskienekkyykynsanlftdltvqslcrgiengdikvDiRigaYhsgkKkgKtHdHgtafRinmeklleygevkviv
interface signature	NTNSTTHTDRYKKHHR

Estimated binding specificities ?

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# IC=11.879 IC/col=0.699 n_of_columns=17

specificity:

A |   8  24  24  24  24  24  24   8   0   0  88   0   0   0   0   0   8
C |  72  24  24  24  24  24  24   8   0   0   0  96  96   0   0   0   8
G |   8  24  24  24  24  24  24  69  96   0   8   0   0   0  96  96  11
T |   8  24  24  24  24  24  24  11   0  96   0   0   0  96   0   0  69

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Related DNA sequences reported in the literature ?

site	source	matches (E-value)
term: MVAI
CCAGG	PubMed	2oaa_B(3.34e-05), 2oaa_AB(4.41e-05)
CCTGG	PubMed	2oaa_B(3.34e-05), 2oaa_AB(4.41e-05)

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updated Tue Dec 19 06:47:24 2023