2oeh_A : 3D-footprint complex

structure name	DETERMINATION OF THE THREE-DIMENSIONAL STRUCTURE OF THE MRF2-DNA COMPLEX USING PARAMAGNETIC SPIN LABELING (AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5B)
source	HOMO SAPIENS
experiment	NMR
structural superfamily	ARID-like;
sequence family	ARID/BRIGHT DNA binding domain;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2oeh_A interface=58,71,72,75,76, radeqaflvalykymkerktpieripylgfkqinlwtmfqaaqklggyetitarrqwKhiydelggnpgsTSaaTCtrrhyerlilpyerfikgeedkplppikprk
interface signature	KTSTC

Estimated binding specificities ?

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# IC=4.434 IC/col=0.887 n_of_columns=5

specificity:

A |   0   0  96  13  54
C |   0   0   0  13  16
G |   0   0   0  16  13
T |  96  96   0  54  13

scan!

Dendrogram of similar interfaces ?

matrix format

  
  ----IGTTSTLT------               +---------------1kqq_A    
                           +-------3 
  --RT--TA--NT--RT--       !       +---------------6lqf_A    
                         --4 
  RA----RCET--SAQAKG   L   !                       +5lxu_A    
                           !        +--------------1 
  RT----RCET--SAQAKT   L   +--------2              +6qec_A    
                                    ! 
  RA--------KGSAQA--   L            +--------------6j5b_C

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updated Fri Sep 13 16:33:52 2024