2oh2_B : 3D-footprint complex

structure name	TERNARY COMPLEX OF HUMAN DNA POLYMERASE (DNA polymerase kappa)
reference	Aggarwal et al. 'To ? ? ?
source	Homo sapiens
experiment	X-ray (resolution=3.05, R-factor=?)
structural superfamily	DNA/RNA polymerases;Lesion bypass DNA polymerase Y-family, little finger domain;
sequence family	impB/mucB/samB family;
redundant complexes	2w7o_A 2w7p_A 3in5_B 3pzp_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2oh2_B interface=115,117,131,342,392,435, lndnkagmegldkekinkiimeatkgsrfygnelkkekqvnqrienmmqqkaqitsqqlrkaqlqvdrfameleqsrnlsntivhidmdafyaavemrdnpelkdkpiavgsmsMlStsnyharrfgvraAmpgfiakrlcpqliivppnfdkyravskevkeiladydpnfmamsldeaylnitkhleerqnwpedkrryfiknsvvfgtsaqevvkeirfrieqkttltasagiapntmlakvcsdknkpngqyqilpnrqavmdfikdlpirkvsgigkvtekmlkalgiitctelyqqrallsllfsetswhyflhislglgsthltrdgerksmsvErtfseinkaeeqyslcqelcselaqdlqkerlkgrtvtiklknvnfevkTrastvssvvstaeeifaiakellkteidadfphplrlrlmgvRissfp

No structural evidence for specific binding to DNA (<4 informative columns)

Dendrogram of similar interfaces ?

matrix format

  
  TCRCFC------MASA----AAPC--IC--------------EG----TG----RG       +------2oh2_B    
                                                                 ! 
  ------------AC----AG--------------------STYGRGLC----RCKT       !        +4f4z_A    
                                                               --4      +-1 
  ----------VGAG--------PCIAKAQA--------KC--YC--LCST--RC--       !    +-2 +4f4y_B    
                                                                 !    ! ! 
  ------------VASA----AAPT--MT--------------EGRTFT--RT----       +----3 +4q45_A    
                                                                      ! 
  ------FCYC------TTAT----------SCICDCEC--ST------SG--RCRT            +-4tqr_A

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updated Fri Sep 13 16:34:04 2024