2p5l_DH : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A DIMER OF N-TERMINAL DOMAINS OF AHRC IN COMPLEX WITH AN 18BP DNA OPERATOR SITE
reference	Phillips et al. J.Mol.Biol. 379 284 2008
source	Bacillus subtilis
experiment	X-ray (resolution=2.85, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	2p5l_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2p5l_D interface=1,37,38,39,42,43, MnkgqrhikireiitsneietqdelvdmlkqdgykvTQAtvSRdikelhlvkvptnngsykysl > 2p5l_H interface=1,22,37,38,39,42,43, MnkgqrhikireiitsneietQdelvdmlkqdgykvTQAtvSRdikelhlvkvptnngsykysl
interface signature	MTQASR/MQTQASR

Estimated binding specificities ?

readout + contact

# IC=13.953 IC/col=0.930 n_of_columns=15

specificity:

A |  87  96   8   0   0  96  68   4  24   0   0  96  61   0   4
C |   3   0  21   0  96   0  10  42  24   0   0   0   8   0   2
G |   4   0  21   0   0   0   8  46  24   0  96   0  10   0   2
T |   2   0  46  96   0   0  10   4  24  96   0   0  17  96  88

scan!

home
updated Wed Jun 24 13:32:36 2026