2p5l_DH : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A DIMER OF N-TERMINAL DOMAINS OF AHRC IN COMPLEX WITH AN 18BP DNA OPERATOR SITE
reference	Phillips et al. J.Mol.Biol. 379 284 2008
source	Bacillus subtilis
experiment	X-ray (resolution=2.85, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2p5l_D interface=1,37,38,39,42,43, MnkgqrhikireiitsneietqdelvdmlkqdgykvTQAtvSRdikelhlvkvptnngsykysl > 2p5l_H interface=1,22,37,38,39,42,43, MnkgqrhikireiitsneietQdelvdmlkqdgykvTQAtvSRdikelhlvkvptnngsykysl
interface signature	MTQASR/MQTQASR

Estimated binding specificities ?

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# IC=14.091 IC/col=0.939 n_of_columns=15

specificity:

A |  84  96  15   0   0  93  63  12  24   0   0  96  81   0   3
C |   3   0   6   0  96   0  15  33  24   0   0   0   9   0   3
G |   3   0  12   0   0   0   6  48  24   0  96   0   3   0   6
T |   6   0  63  96   0   3  12   3  24  96   0   0   3  96  84

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updated Fri Dec 13 12:56:13 2024