2p5l_DH : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A DIMER OF N-TERMINAL DOMAINS OF AHRC IN COMPLEX WITH AN 18BP DNA OPERATOR SITE
reference	Phillips et al. J.Mol.Biol. 379 284 2008
source	Bacillus subtilis
experiment	X-ray (resolution=2.85, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	2p5l_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2p5l_D interface=1,37,38,39,42,43, MnkgqrhikireiitsneietqdelvdmlkqdgykvTQAtvSRdikelhlvkvptnngsykysl > 2p5l_H interface=1,22,37,38,39,42,43, MnkgqrhikireiitsneietQdelvdmlkqdgykvTQAtvSRdikelhlvkvptnngsykysl
interface signature	MTQASR/MQTQASR

Estimated binding specificities ?

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# IC=13.994 IC/col=0.933 n_of_columns=15

specificity:

A |  82  96   6   0   0  92  60   6  24   0   0  96  75   0   3
C |   5   0  10   0  96   0  13  24  24   0   0   0   6   0   3
G |   6   0  13   0   0   0  10  63  24   0  96   0   6   0   6
T |   3   0  67  96   0   4  13   3  24  96   0   0   9  96  84

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updated Tue Jul 29 18:30:31 2025