2p5l_DH : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A DIMER OF N-TERMINAL DOMAINS OF AHRC IN COMPLEX WITH AN 18BP DNA OPERATOR SITE
reference	Phillips et al. J.Mol.Biol. 379 284 2008
source	Bacillus subtilis
experiment	X-ray (resolution=2.85, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	2p5l_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2p5l_D interface=1,37,38,39,42,43, MnkgqrhikireiitsneietqdelvdmlkqdgykvTQAtvSRdikelhlvkvptnngsykysl > 2p5l_H interface=1,22,37,38,39,42,43, MnkgqrhikireiitsneietQdelvdmlkqdgykvTQAtvSRdikelhlvkvptnngsykysl
interface signature	MTQASR/MQTQASR

Estimated binding specificities ?

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# IC=13.694 IC/col=0.913 n_of_columns=15

specificity:

A |  91  96  10   0   0  96  24  24  10   0   0  96  69   0   5
C |   0   0  12   0  96   0  24  24  18   0   0   0  10   0   6
G |   0   0  10   0   0   0  24  24  10   0  96   0  12   0   5
T |   5   0  64  96   0   0  24  24  58  96   0   0   5  96  80

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updated Mon Sep 9 15:50:41 2024