2pi4_A : 3D-footprint complex

structure name	T7RNAP COMPLEXED WITH A PHI10 PROTEIN AND INITIATING GTPS. (DNA-directed RNA polymerase)
reference	Kennedy et al. J.Mol.Biol. 370 256 2007
source	Enterobacteria phage T7
experiment	X-ray (resolution=2.50, R-factor=0.265)
structural superfamily	DNA/RNA polymerases;
sequence family	DNAdependent RNA polymerase;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2pi4_A interface=75,77,114,118,185,210,216,219,725,727,735,737,739,740,741, iakndfsdielaaipfntladhygerlareqlalehesyemgearfrkmfplittllpkmiarindwfeevkakRgKrptafqflqeikpeavayitikttlacltsadnttvQavaSaigraiedearfgrirdleakhfkknveeqlnkrvghvykkafmqvveadmlskgllggeawsswhKedsihvgvrciemliestgmvslhRqnagvVgqDsetielapeyaeaiatragalagispmfqpcvvppkpwtgitgggywangrrplalvrthskkalmryedvympevykainiaqntawkinkkvlavanvitkwkhcpvedipaiereelpmkpedidmnpealtawkraaaavyrkdkarksrrislefmleqankfanhkaiwfpynmdwrgrvyavsmfnpqgndmtkglltlakgkpigkegyywlkihgancagvdkvpfperikfieenhenimacaksplentwwaeqdspfcflafcfeyagvqhhglsyncslplafdgscsgiqhfsamlrdevggravnllpsetvqdiygivakkvneilqadaingtdnevvtvtdentgeisekvklgtkalagqwlaygvtrsvtkrsvmtlaygskefgfrqqvledtiqpaidsgkglmftqpnqaagymakliwesvsvtvvaaveamnwlksaakllaaevkdkktgeilrkrcavhwvtpdgfpvwqeykkpiqtRlNlmflgqfRlQpTINtnkdseidahkqesgiapnfvhsqdgshlrktvvwahekygiesfalihdsfgtipadaanlfkavretmvdtyescdvladfydqfadqlhesqldkmpalpakgnlnlrdilesdfafa
interface signature	RKQSKRVDRNRQTIN

Estimated binding specificities ?

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# IC=13.335 IC/col=0.952 n_of_columns=14

specificity:

A |   0  96  24  11  96  24   9  96   0   9   0  96   0   0
C |   0   0  24   9   0  24   9   0  96   9  96   0  96   0
G |   0   0  24   9   0  24  69   0   0  11   0   0   0   0
T |  96   0  24  67   0  24   9   0   0  67   0   0   0  96

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updated Mon Dec 16 19:59:50 2024