2pi5_A : 3D-footprint complex

structure name	T7 RNA POLYMERASE COMPLEXED WITH A PHI10 PROMOTER (DNA-directed RNA polymerase)
reference	Kennedy et al. J.Mol.Biol. 370 256 2007
source	Enterobacteria phage T7
experiment	X-ray (resolution=2.90, R-factor=0.249)
structural superfamily	DNA/RNA polymerases;
sequence family	DNAdependent RNA polymerase;
reference complex	1msw_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2pi5_A interface=75,77,210,216,219,725,727,735,737,739, iakndfsdielaaipfntladhygerlareqlalehesyemgearfrkmfplittllpkmiarindwfeevkakRgKrptafqflqeikpeavayitikttlacltsadnttvqavasaigraiedearfgrirdleakhfkknveeqlnkrvghvykkafmqvveadmlskgllggeawsswhkedsihvgvrciemliestgmvslhRqnagvVgqDsetielapeyaeaiatragalagispmfqpcvvppkpwtgitgggywangrrplalvrthskkalmryedvympevykainiaqntawkinkkvlavanvitkwkhcpvedipaiereelpmkpedidmnpealtawkraaaavyrkdkarksrrislefmleqankfanhkaiwfpynmdwrgrvyavsmfnpqgndmtkglltlakgkpigkegyywlkihgancagvdkvpfperikfieenhenimacaksplentwwaeqdspfcflafcfeyagvqhhglsyncslplafdgscsgiqhfsamlrdevggravnllpsetvqdiygivakkvneilqadaingtdnevvtvtdentgeisekvklgtkalagqwlaygvtrsvtkrsvmtlaygskefgfrqqvledtiqpaidsgkglmftqpnqaagymakliwesvsvtvvaaveamnwlksaakllaaevkdkktgeilrkrcavhwvtpdgfpvwqeykkpiqtRlNlmflgqfRlQpTintnkdseidahkqesgiapnfvhsqdgshlrktvvwahekygiesfalihdsfgtipadaanlfkavretmvdtyescdvladfydqfadqlhesqldkmpalpakgnlnlrdilesdfafa
interface signature	RKRVDRNRQT

Estimated binding specificities ?

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# IC=10.905 IC/col=0.839 n_of_columns=13

specificity:

A |   0   0   0  96   0  10  90  24  10  24   6   5  96
C |   0   0   0   0   0  10   6  24  10  24  10   6   0
G |  96   0  96   0  96  16   0  24  15  24  15   5   0
T |   0  96   0   0   0  60   0  24  61  24  65  80   0

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updated Thu Sep 12 16:27:29 2024