legend  pdf

interface graphfootprint logointerface matrixatomic interactionsinterface residue numbers

3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

home
updated Sun Aug 3 06:29:39 2025

structure name	STRUCTURE OF CHLORELLA VIRUS DNA LIGASE-PRODUCT DNA COMPLEX (Chlorella virus DNA ligase)
reference	Nandakumar et al. Nat.Struct.Mol.Biol. 14 770 2007
source	Paramecium bursaria Chlorella virus 1
experiment	X-ray (resolution=3.00, R-factor=?)
structural superfamily	DNA ligase/mRNA capping enzyme, catalytic domain;Nucleic acid-binding proteins;
sequence family	ATP dependent DNA ligase domain;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2q2u_C interface=249,286, maitkpllaatleniedvqfpclatpkidgirsvkqtqmlsrtfkpirnsvmnrlltellpegsdgeisiegatfqdttsavmtghkmynakfsyywfdyvtddplkkyidrvedmknyitvhphilehaqvkiiplipveinnitellqyerdvlskgfegvmirkpdgkykfgrstlkegillkmkqfkdaeatiismtalfkntntktkdnfgyskrsthksgkveedvmgsievdydgvvfsigTgfdadqrrdfwqnkesyigkmvkfkyfemgskdcprFpvfigir