2qkb_AB : 3D-footprint complex

structure name	HUMAN RNASE H CATALYTIC DOMAIN MUTANT D210N IN COMPLEX WITH 20-MER RNA/DNA HYBRID
reference	Gaidamakov et al. Mol.Cell 28 264 2007
source	Homo sapiens
experiment	X-ray (resolution=2.40, R-factor=?)
structural superfamily	Ribonuclease H-like;
reference complex	8swb_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2qkb_A interface=19,21,50,51,81,89,101, gshmgdfvvvytdgccssNgRrrpragigvywgpghplnvgirlpgrqtNQraeihaackaieqaktqninklvlytnsmFtingitnWvqgwkkngwktSagkevinkedfvalerltqgmdiqwmhvpghsgfigneeadrlaregakqs > 2qkb_B interface=18,48,49,79,87,98,99, shmgdfvvvytdgccssNrrrpragigvywgpghplnvgirlpgrqtNQraeihaackaieqaktqninklvlytnsmFtingitnWvqgwkkngwkTSagkevinkedfvalerltqgmdiqwmhvpghsgfigneeadrlaregakqs
interface signature	NRNQFWS/NNQFWTS

Estimated binding specificities ?

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# IC=12.912 IC/col=0.993 n_of_columns=13

specificity:

A |  96  96   0   9  87   0  12   4   0   0   9   9   0
C |   0   0   0  69   3   0   9   3   0   0  62   9  96
G |   0   0   0   9   3  96  66   3  96   0  16  69   0
T |   0   0  96   9   3   0   9  86   0  96   9   9   0

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updated Mon Jan 5 01:44:02 2026