2vih_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE IS608 TRANSPOSASE IN COMPLEX WITH LEFT END 26-MER DNA
reference	Ronning et al. 'Cell(Cambridge,Mass.)' 132 208 2008
source	HELICOBACTER PYLORI
experiment	X-ray (resolution=2.10, R-factor=?)
structural superfamily	Transposase IS200-like;
reference complex	2vih_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2vih_A interface= vlyksnhnvvysckyhivwcpkyrrkvlvgavemrlkeiiqevakelrveiiemqtdkdhihiladidpsfgvmkfiktakgrssrilrqefnhlktklptlwtnscfistvggaplnvvkqyienqqnsnrpkqkekwksyvdnlqtkal > 2vih_B interface= vlyksnhnvvysckyhivwcpkyrrkvlvgavemrlkeiiqevakelrveiiemqtdkdhihiladidpsfgvmkfiktakgrssrilrqefnhlktklptlwtnscfistvggaplnvvkqyienqqn
interface signature	/

Estimated binding specificities ?

contact

# IC=8.431 IC/col=0.367 n_of_columns=23

specificity:

A |  96   0  24  24  24  24  24  24  24  24  24   0  24  24  24  24  24  24  54   0   0   0  13
C |   0   0  24  24  24  24  24  24  24  24  24   0  24  24  24  24  24  24  13   0   0   0  16
G |   0  96  24  24  24  24  24  24  24  24  24   0  24  24  24  24  24  24  16   0  96  96  54
T |   0   0  24  24  24  24  24  24  24  24  24  96  24  24  24  24  24  24  13  96   0   0  13

scan!

home
updated Wed Jun 24 13:48:18 2026