| structure name | URACIL RECOGNITION IN ARCHAEAL DNA POLYMERASES CAPTURED BY X-RAY CRYSTALLOGRAPHY. (DNA POLYMERASE) |
| reference | Connolly et al. J.Mol.Biol. 381 529 2008 |
| source | THERMOCOCCUS GORGONARIUS |
| experiment | X-ray (resolution=2.78, R-factor=0.229) |
| structural superfamily | DNA/RNA polymerases;Ribonuclease H-like; |
| sequence family | DNA polymerase family B; DNA polymerase family B, exonuclease do; |
| reference complex | 2xhb_A |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence |
No structural evidence for specific binding to DNA (<4 informative columns)
Dendrogram of similar interfaces ?
matrix format------------------------------RG------RC--------------------------------------------RT-- L +-----------2vwj_A ! ----------IT--------------------------------------QGQAVTFTITSAQTIGNGSGYGFTVAKTLTKARG---- L +--------------3 +-------3iay_A ! ! +--1 ----------------------------RT--FTQT----------RT--SG------------------YG--AA----KA------ L ! +-2 +-------3k59_A +-4 ! ----------------------------------------------------------------------YT--WT----KA------ ! ! +----------3l8b_A +-5 ! --------------LC----NGKGYG----------MG--RC---------------------------------------------- ! ! +--------------------------1kln_A --6 ! ------------TT--NTFT------NGIA------------YTHT--MG------------------------------------KT ! +---------------------------2py5_B ! NCKGCAYTRC------------------------------------------------------------------------------ L +----------------------------1jj4_B |
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updated Thu Sep 12 16:35:14 2024