2zhg_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF SOXR IN COMPLEX WITH DNA (Redox-sensitive transcriptional activator soxR)
reference	Kobayashi et al. Proc.Natl.Acad.Sci.Usa 105 4121 2008
source	Escherichia coli
experiment	X-ray (resolution=2.80, R-factor=0.243)
structural superfamily	Putative DNA-binding domain;
sequence family	MerR, DNA binding; MerR family regulatory protein;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 2zhg_A interface=17,21, alltpgevakrsgvavSalhFyeskglitsirnsgnqrrykrdvlryvaiikiaqrigiplatigeafgvtlsakewkqlssqwreeldrrihtlvalrdeldgcigcgclsrsdcplrnp
interface signature	SF

Estimated binding specificities ?

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# IC=2.391 IC/col=0.598 n_of_columns=4

specificity:

A |  76   0  28  11
C |   2  96  19  19
G |   9   0   9   9
T |   9   0  40  57

scan!

Dendrogram of similar interfaces ?

matrix format

  
  RART------       +------4r24_B    
                   ! 
  KGQGRT----   L   !         +5i44_I    
                 --4       +-1 
  KCRT----YC       ! +-----2 +1r8e_A    
                   ! !     ! 
  RGHTHC--YG   L   +-3     +1r8d_B    
                     ! 
  EARTYARTYG   L     +------6jgx_B

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updated Fri Sep 13 16:51:59 2024