3bdn_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE LAMBDA REPRESSOR
reference	Jaru-Ampornpan et al. Nature 452 1022 2008
source	Enterobacteria phage lambda
experiment	X-ray (resolution=3.91, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	1lmb_4
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3bdn_A interface=33,34,44,45,55, stkkkpltqeqledarrlkaiyekkknelglsQEsvadkmgmgQSgvgalfngiNalnaynaallakilkvsveefspsiareiyemyeavsmqpslrseyeypvfshvqagmfspelrtftkgdaerwvsttkkasdsafwlevegnsmtaptgskpsfpdgmlilvdpeqavepgdfciarlggdeftfkklirgsgqvflqplnpqypmipescsvvgkviasqwpeetfg > 3bdn_B interface=2,33,45,55, sTkkkpltqeqledarrlkaiyekkknelglsQesvadkmgmgqSgvgalfngiNalnaynaallakilkvsveefspsiareiyemyeavsmqpslrseyeypvfshvqagmfspelrtftkgdaerwvsttkkasdsafwlevegnsmtaptgskpsfpdgmlilvdpeqavepgdfciarlggdeftfkklirgsgqvflqplnpqypmipescsvvgkviasqwpeetfg
interface signature	QEQSN/TQSN

Estimated binding specificities ?

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# IC=7.268 IC/col=0.727 n_of_columns=10

specificity:

A |   0   0   0  63   9  14  24  12  12   0
C |   0  96  96  12  57  16  24  14   9   0
G |   0   0   0  12  12   9  24  70  67  96
T |  96   0   0   9  18  57  24   0   8   0

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updated Mon Jan 5 03:14:51 2026