3bdn_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE LAMBDA REPRESSOR
reference	Jaru-Ampornpan et al. Nature 452 1022 2008
source	Enterobacteria phage lambda
experiment	X-ray (resolution=3.91, R-factor=?)
structural superfamily	LexA/Signal peptidase;lambda repressor-like DNA-binding domains;
reference complex	3bdn_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3bdn_A interface=33,34,44,45,55, stkkkpltqeqledarrlkaiyekkknelglsQEsvadkmgmgQSgvgalfngiNalnaynaallakilkvsveefspsiareiyemyeavsmqpslrseyeypvfshvqagmfspelrtftkgdaerwvsttkkasdsafwlevegnsmtaptgskpsfpdgmlilvdpeqavepgdfciarlggdeftfkklirgsgqvflqplnpqypmipescsvvgkviasqwpeetfg > 3bdn_B interface=2,33,45,55, sTkkkpltqeqledarrlkaiyekkknelglsQesvadkmgmgqSgvgalfngiNalnaynaallakilkvsveefspsiareiyemyeavsmqpslrseyeypvfshvqagmfspelrtftkgdaerwvsttkkasdsafwlevegnsmtaptgskpsfpdgmlilvdpeqavepgdfciarlggdeftfkklirgsgqvflqplnpqypmipescsvvgkviasqwpeetfg
interface signature	QEQSN/TQSN

Estimated binding specificities ?

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# IC=6.527 IC/col=0.653 n_of_columns=10

specificity:

A |   0  15  24  24  61  11  15   0   0  96
C |  96  63  24  24   7   9  15   0   0   0
G |   0   7  24  24  13  61  17  96  96   0
T |   0  11  24  24  15  15  49   0   0   0

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updated Mon Sep 9 17:12:00 2024