3bdn_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE LAMBDA REPRESSOR
reference	Jaru-Ampornpan et al. Nature 452 1022 2008
source	Enterobacteria phage lambda
experiment	X-ray (resolution=3.91, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	1lmb_4
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3bdn_A interface=33,34,44,45,55, stkkkpltqeqledarrlkaiyekkknelglsQEsvadkmgmgQSgvgalfngiNalnaynaallakilkvsveefspsiareiyemyeavsmqpslrseyeypvfshvqagmfspelrtftkgdaerwvsttkkasdsafwlevegnsmtaptgskpsfpdgmlilvdpeqavepgdfciarlggdeftfkklirgsgqvflqplnpqypmipescsvvgkviasqwpeetfg > 3bdn_B interface=2,33,45,55, sTkkkpltqeqledarrlkaiyekkknelglsQesvadkmgmgqSgvgalfngiNalnaynaallakilkvsveefspsiareiyemyeavsmqpslrseyeypvfshvqagmfspelrtftkgdaerwvsttkkasdsafwlevegnsmtaptgskpsfpdgmlilvdpeqavepgdfciarlggdeftfkklirgsgqvflqplnpqypmipescsvvgkviasqwpeetfg
interface signature	QEQSN/TQSN

Estimated binding specificities ?

readout + contact

# IC=6.499 IC/col=0.650 n_of_columns=10

specificity:

A |   0  13  24  24  61   7  17   0   0  96
C |  96  61  24  24  11  17  15   0   0   0
G |   0  15  24  24  15  61  15  96  96   0
T |   0   7  24  24   9  11  49   0   0   0

scan!

home
updated Wed Jun 24 15:09:26 2026