3c28_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE PRODUCT SYNAPSE COMPLEX
reference	Van Duyne et al. 'To ? ? ?
source	Bacteriophage P1
experiment	X-ray (resolution=2.60, R-factor=?)
structural superfamily	DNA breaking-rejoining enzymes;lambda integrase-like, N-terminal domain;
reference complex	7rhx_G
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3c28_A interface=21,22,24,25,28,67,68,71,75,200,202,203,216,218,221,240,275, sdevrknlmdmfrdrqafseHTwKMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgQlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdimlihalslgvtklverwisvsgvaddpnnylfcRvRKngvaapsatsqlStRalEgifeathrliygakddgqRylawsghsarvgaardmaragvsipeimqaggwtNvnivmnyirnldsetgamvrlled > 3c28_B interface=21,22,25,28,67,68,71,75,182,222,224,225,238,240,243,263,298,300, sdevrknlmdmfrdrqafseHTwkMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgQlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtdggrmlihigrtKtlvstagvekalslgvtklverwisvsgvaddpnnylfcRvRKngvaapsatsqlStRalEgifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtNvNivmnyirgmvrlled
interface signature	HTKMSKTQQRRKSRERN/HTMSKTQQKRRKSRERNN

Estimated binding specificities ?

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# IC=28.045 IC/col=0.825 n_of_columns=34

specificity:

A |  92   8  92  24  24  24   8   0   0   0  96   0  88  88  24  24   0  24  84  24   0   0  96   0  96   0   0  84  24  24  24  12  96   0
C |   0   4   0  24  24  24   8  96   0   0   0   0   0   4  24  24   0  24   4  24  96   0   0   0   0  96   0   4  24  24  24   4   0   4
G |   4   0   4  24  24  24   4   0  96   0   0   0   8   0  24  24   0  24   4  24   0   0   0   0   0   0  96   4  24  24  24   8   0   0
T |   0  84   0  24  24  24  76   0   0  96   0  96   0   4  24  24  96  24   4  24   0  96   0  96   0   0   0   4  24  24  24  72   0  92

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updated Mon Jan 5 03:24:59 2026