3c29_AB : 3D-footprint complex

structure name	CRE-LOXP SYNAPTIC STRUCTURE
reference	Van Duyne et al. 'To ? ? ?
source	Bacteriophage P1
experiment	X-ray (resolution=2.20, R-factor=?)
structural superfamily	DNA breaking-rejoining enzymes;lambda integrase-like, N-terminal domain;
reference complex	7rhx_G
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3c29_A interface=21,22,24,25,28,67,68,71,75,222,224,225,238,240,243,263,298,301, sdevrknlmdmfrdrqafseHTwKMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgQlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtdggrmlihigrtktlvstagvekalslgvtklverwisvsgvaddpnnylfcRvRKngvaapsatsqlStRalEgifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtNvnIvmnyirnldsetgamvrlled > 3c29_B interface=21,22,24,25,28,67,68,71,75,222,224,225,238,240,243,263,298,300, sdevrknlmdmfrdrqafseHTwKMllSvcrswaawcklnnrkwfpaepedvrdyllylqarglavKTiqQhlgQlnmlhrrsglprpsdsnavslvmrrirkenvdagerakqalafertdfdqvrslmensdrcqdirnlaflgiayntllriaeiarirvkdisrtdggrmlihigrtktlvstagvekalslgvtklverwisvsgvaddpnnylfcRvRKngvaapsatsqlStRalEgifeathrliygakddsgqRylawsghsarvgaardmaragvsipeimqaggwtNvNivmnyirnldsetgamvrlled
interface signature	HTKMSKTQQRRKSRERNI/HTKMSKTQQRRKSRERNN

Estimated binding specificities ?

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# IC=27.040 IC/col=0.795 n_of_columns=34

specificity:

A |  92   0  91  24  24  24   4   0   0   0  96   0  96   4  24  24  24  24  24  77   0   0  96   0  96   0   0  77  24  24  24   0  96   4
C |   0   0   0  24  24  24   4  96   0   0   0   0   0   9  24  24  24  24  24  11  96   0   0   0   0  96   0   6  24  24  24   4   0   4
G |   4   0   4  24  24  24   4   0  96   0   0   0   0  13  24  24  24  24  24   4   0   0   0   0   0   0  96   4  24  24  24   1   0   2
T |   0  96   1  24  24  24  84   0   0  96   0  96   0  70  24  24  24  24  24   4   0  96   0  96   0   0   0   9  24  24  24  91   0  86

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updated Mon Jan 5 03:25:56 2026