3c46_B : 3D-footprint complex

structure name	X-RAY CRYSTAL STRUCTURE OF THE N4 MINI-VRNAP P2_7A PROMOTER COMPLEX SOAKED WITH MGCL2 (Virion RNA polymerase)
reference	Gleghorn et al. Mol.Cell 32 707 2008
source	Bacteriophage N4
experiment	X-ray (resolution=2.00, R-factor=?)
reference complex	3q23_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3c46_B interface=110,263,264,265,897,900, teelkegidavypslvgtadskaegiknyfklsftlpeeqksrtvgseaplkdvaqalssraryelfteketanpafngevikrykelmehgegiadilrsrlakflntKdvgkrfaqgteanrwvggkllniveqdgdtfkyneqllqtavlaglqwrltatsntaikdakdvaaitgidqallpeglveqfdtgmtlteavsslaqkiesywglsrnpnaplgytkgiptamaaeilaafvestdvvenivdmseidpdnKKTiglytiteldsfdpinsfptaieeavlvnptekmffgddippvantqlrnpavrntpeqkaalkaeqatefyvhtpmvqfyetlgkdrilelmgagtlnkellndnhakslegknrsvedsynqlfsvieqvraqsedistvpihyaynmtrvgrmqmlgkynpqsaklvreailptkatldlsnqnnedfsafqlglaqaldikvhtmtrevmsdeltkllegnlkpaidmmvefnttgslpenavdvlntalgdrksfvalmalmeysrylvaedksafvtplyveadgvtngpinammlmtgglftpdwirniakgglfigspnktmnehrstadnndlyqastnalmeslgklrsnyasnmpiqsqidsllslmdlflpdinlgengalelkrgiaknpltitiygsgargiagklvssvtdaiyermsdvlkarakdpnisaamamfgkqaaseahaeellarflkdmetltstvpvkrkgvlelqstgtgakgkinpktytikgeqlkalqenmlhffveplrngitqtvgeslvysteqlqkatqiqsvvledmfkqrvqeklaekakdptwkkgdfltqkelndiqaslnnlapmietgsqtfyiagsenaevanqvlatnldDrmRvpmsiyapaqagvagipfmtigtgdgmmmqtlstmkgapkntlkifdgmniglnditdasrkaneavytswqgnpiknvyesyakfmknvdfsklspealeaigksaleydqrenatvddianaasliernlrnialgvdirhkvldkvnlsidqmaavgapyqnngkidlsnmtpeqqadelnklfreelear
interface signature	KKKTDR

Estimated binding specificities ?

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# IC=4.894 IC/col=0.816 n_of_columns=6

specificity:

A |   0  24  76   0   0  19
C |   0  24  20   0  96  19
G |  96  24   0  96   0  39
T |   0  24   0   0   0  19

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updated Thu Sep 12 16:59:52 2024