3clc_ABCD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE RESTRICTION-MODIFICATION CONTROLLER PROTEIN C.ESP1396I TETRAMER IN COMPLEX WITH ITS NATURAL 35 BASE-PAIR OPERATOR
reference	McGeehan et al. 'Nucleic 36 4778 2008
source	Enterobacter sp.
experiment	X-ray (resolution=2.80, R-factor=?)
structural superfamily	lambda repressor-like DNA-binding domains;
reference complex	3s8q_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3clc_A interface=33,34,35,38,42,45, esfllskvsfvikkirlekgmtqedlayksnlDRTyiSgieRnsRnltikslelimkglevsdvvffemlikeilk > 3clc_B interface=33,34,35,36,38,42,45, esfllskvsfvikkirlekgmtqedlayksnlDRTYiSgieRnsRnltikslelimkglevsdvvffemlikeilkh > 3clc_C interface=23,24,33,35,36,38,42,45, esfllskvsfvikkirlekgmtQEdlayksnlDrTYiSgieRnsRnltikslelimkglevsdvvffemlikeilkh > 3clc_D interface=33,34,35,38,42,45, esfllskvsfvikkirlekgmtqedlayksnlDRTyiSgieRnsRnltikslelimkglevsdvvffemlikeilk
interface signature	DRTSRR/DRTYSRR/QEDTYSRR/DRTSRR

Estimated binding specificities ?

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# IC=24.622 IC/col=0.746 n_of_columns=33

specificity:

A |   0   0   1   4  96  94   7  24  24  24  24   0  24   4   0   0   4   1   1   0  24   1  24  24  24  24   0   4   0  24  88   0  96
C |   0   0   4   9   0   1  13  24  24  24  24   0  24  90  96   0   3   1   1   0  24  72  24  24  24  24   0   1  74  24   1  96   0
G |   0  96   1  80   0   1   9  24  24  24  24  96  24   1   0  96   1  94   6  96  24   4  24  24  24  24  96   1   1  24   3   0   0
T |  96   0  90   3   0   0  67  24  24  24  24   0  24   1   0   0  88   0  88   0  24  19  24  24  24  24   0  90  21  24   4   0   0

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updated Mon Sep 9 17:21:16 2024