3cmu_A : 3D-footprint complex

structure name	MECHANISM OF HOMOLOGOUS RECOMBINATION FROM THE RECA-SSDNA/DSDNA STRUCTURES
reference	Nature 453 489 2008
experiment	X-ray (resolution=4.20, R-factor=0.276)
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;RecA protein, C-terminal domain;
sequence family	recA bacterial DNA recombination protein;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3cmu_A interface=161,162,163,456,461,489,490,491,789,794,822,823,824,1122,1127,1155,1156,1157,1455,1460,1487,1488,1489,1490,1786, vetistgslsldialgagglpmgriveiygpessgkttltlqviaaaqregktcafidaehaldpiyarklgvdidnllcsqpdtgeqaleicdalarsgavdvivvdsvaaltpkaeiegeigdshmglaarmmsqamrklagnlkqsntllifinqirMKIgvmfgnpetttggnalkfyasvrldirrigavkegenvvgsetrvkvvknkiaapfkqaefqilygeginfygelvdlgvkekliekagawysykgekigqgkanatawlkdnpetakeiekkvrelllaidenkqkalaaalgqiekqfgkgsimrlgedrsmdvetistgslsldialgagglpmgriveiygpessgkttltlqviaaaqregktcafidaehaldpiyarklgvdidnllcsqpdtgeqaleicdalarsgavdvivvdsvaaltpkaeiegeigdshMglaaRmmsqamrklagnlkqsntllifinqirMKIgvmfgnpetttggnalkfyasvrldirrigavkegenvvgsetrvkvvknkiaapfkqaefqilygeginfygelvdlgvkekliekagawysykgekigqgkanatawlkdnpetakeiekkvrelllsnpnsaidenkqkalaaalgqiekqfgkgsimrlgedrsmdvetistgslsldialgagglpmgriveiygpessgkttltlqviaaaqregktcafidaehaldpiyarklgvdidnllcsqpdtgeqaleicdalarsgavdvivvdsvaaltpkaeiegeigdshMglaaRmmsqamrklagnlkqsntllifinqirMKIgvmfgnpetttggnalkfyasvrldirrigavkegenvvgsetrvkvvknkiaapfkqaefqilygeginfygelvdlgvkekliekagawysykgekigqgkanatawlkdnpetakeiekkvrelllsnpnsaidenkqkalaaalgqiekqfgkgsimrlgedrsmdvetistgslsldialgagglpmgriveiygpessgkttltlqviaaaqregktcafidaehaldpiyarklgvdidnllcsqpdtgeqaleicdalarsgavdvivvdsvaaltpkaeiegeigdshMglaaRmmsqamrklagnlkqsntllifinqirMKIgvmfgnpetttggnalkfyasvrldirrigavkegenvvgsetrvkvvknkiaapfkqaefqilygeginfygelvdlgvkekliekagawysykgekigqgkanatawlkdnpetakeiekkvrelllsnpnsaidenkqkalaaalgqiekqfgkgsimrlgedrsmdvetistgslsldialgagglpmgriveiygpessgkttltlqviaaaqregktcafidaehaldpiyarklgvdidnllcsqpdtgeqaleicdalarsgavdvivvdsvaaltpkaeiegeigdshMglaaRmmsqamrklagnlkqsntllifinqiRMKIgvmfgnpetttggnalkfyasvrldirrigavkegenvvgsetrvkvvknkiaapfkqaefqilygeginfygelvdlgvkekliekagawysykgekigqgkanatawlkdnpetakeiekkvrelllsnpnsaidenkqkalaaalgqiekqfgkgsimrlgedrsmdvetistgslsldialgagglpmgriveiygpessgkttltlqviaaaqregktcafidaehaldpiyarklgvdidnllcsqpdtgeqaleicdalarsgavdvivvdsvaaltpkaeiemglaaRmmsqamrklagnlkqsntllifinqirnpetttggnalkfyasvrldirrigavkegenvvgsetrvkvvknkiaapfkqaefqilygeginfygelvdlgvkekliekagawysykgekigqgkanatawlkdnpetakeiekkvrelll
interface signature	MKIMRMKIMRMKIMRMKIMRRMKIR

Estimated binding specificities ?

contact

# IC=15.779 IC/col=1.127 n_of_columns=14

specificity:

A |   0   0   4   0   0  12   0   0   4   0   0   7   0   0
C |   0   0   4   0   0  12   0   0   7   0   0   7   0   0
G |   0   0   7   0   0  12   0   0   4   0   0   7   0   0
T |  96  96  81  96  96  60  96  96  81  96  96  75  96  96

scan!

home
updated Tue Dec 17 23:16:54 2024