3coq_AB : 3D-footprint complex

structure name	STRUCTURAL BASIS FOR DIMERIZATION IN DNA RECOGNITION BY GAL4
reference	Fitzgerald et al. Structure 16 1019 2008
source	Saccharomyces cerevisiae
experiment	X-ray (resolution=2.40, R-factor=?)
structural superfamily	Zn2/Cys6 DNA-binding domain;
reference complex	3coq_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3coq_A interface=11,12, eqacdicrlkKLkcskekpkcakclknnwecryspktkrspltrahltevesrlerleqlfllifpredldmilkmdslqdikalltgl > 3coq_B interface=11, eqacdicrlkKlkcskekpkcakclknnwecryspktkrspltrahltevesrlerleqlfllifpredldmilkmdslqdikalltgl
interface signature	KL/K

Estimated binding specificities ?

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# IC=5.766 IC/col=0.339 n_of_columns=17

specificity:

A |  13   0   0  24  24  24  24  24  24  24  24  24  24  24   0   0  13
C |  54   0   0  24  24  24  24  24  24  24  24  24  24  24  96  96  13
G |  16  96  96  24  24  24  24  24  24  24  24  24  24  24   0   0  54
T |  13   0   0  24  24  24  24  24  24  24  24  24  24  24   0   0  16

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updated Mon Sep 9 17:22:26 2024