3dpg_AB : 3D-footprint complex

structure name	SGRAI WITH NONCOGNATE DNA BOUND
reference	Dunten et al. 'Nucleic 36 5405 2008
source	Streptomyces griseus
experiment	X-ray (resolution=1.91, R-factor=?)
structural superfamily	Restriction endonuclease-like;
reference complex	6obj_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3dpg_A interface=30,35,91,94,95,151,243,245,246,247,248, pftysieatrnlatterciqdirnapvrnRstqfQlaqqnmlaytfgevipgfasagingmdyrdvigrpvenavtegthffrddfrvdsNakAKvagdifeivssavmwncaarwnslmvgegwrsqprysrptlspsprrqvavlnlpRsfdwvsllvpesqevieefraglrkdglglptstpdlavvvlpeefqndemwreeiagltrpnqillsgayqrlqgrvqpgeislavafkrSlRSDRlyqplyeanvmqlllegklgapkvefevhtlapegtnafvtyeaaslyglaegrsavhrairelyvpptaadlarrffaflnermelvng > 3dpg_B interface=30,35,91,94,95,151,243,245,246,247,248, pftysieatrnlatterciqdirnapvrnRstqfQlaqqnmlaytfgevipgfasagingmdyrdvigrpvenavtegthffrddfrvdsNakAKvagdifeivssavmwncaarwnslmvgegwrsqprysrptlspsprrqvavlnlpRsfdwvsllvpesqevieefraglrkdglglptstpdlavvvlpeefqndemwreeiagltrpnqillsgayqrlqgrvqpgeislavafkrSlRSDRlyqplyeanvmqlllegklgapkvefevhtlapegtnafvtyeaaslyglaegrsavhrairelyvpptaadlarrffaflnermelvng
interface signature	RQNAKRSRSDR/RQNAKRSRSDR

Estimated binding specificities ?

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# IC=11.096 IC/col=1.110 n_of_columns=10

specificity:

A |  13  13   0  96   0   0   0   0   0   0
C |  13  54   0   0  96  96   0   0   0   0
G |  16  16  96   0   0   0  96  96   0  96
T |  54  13   0   0   0   0   0   0  96   0

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updated Fri Dec 15 14:19:39 2023