3dvo_AB : 3D-footprint complex

structure name	SGRAI WITH COGNATE DNA AND CALCIUM BOUND
reference	Dunten et al. 'Nucleic 36 5405 2008
source	Streptomyces griseus
experiment	X-ray (resolution=1.89, R-factor=?)
structural superfamily	Restriction endonuclease-like;
reference complex	6obj_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3dvo_A interface=30,35,91,95,151,243,245,246,247,248, pftysieatrnlatterciqdirnapvrnRstqfQlaqqnmlaytfgevipgfasagingmdyrdvigrpvenavtegthffrddfrvdsNakaKvagdifeivssavmwncaarwnslmvgegwrsqprysrptlspsprrqvavlnlpRsfdwvsllvpesqevieefraglrkdglglptstpdlavvvlpeefqndemwreeiagltrpnqillsgayqrlqgrvqpgeislavafkrSlRSDRlyqplyeanvmqlllegklgapkvefevhtlapegtnafvtyeaaslyglaevhrairelyvpptaadlarrffaflnermelvng > 3dvo_B interface=30,35,91,94,95,151,243,245,246,247,248, pftysieatrnlatterciqdirnapvrnRstqfQlaqqnmlaytfgevipgfasagingmdyrdvigrpvenavtegthffrddfrvdsNakAKvagdifeivssavmwncaarwnslmvgegwrsqprysrptlspsprrqvavlnlpRsfdwvsllvpesqevieefraglrkdglglptstpdlavvvlpeefqndemwreeiagltrpnqillsgayqrlqgrvqpgeislavafkrSlRSDRlyqplyeanvmqlllegklgapkvefevhtlapegtnafvtyeaaslyglaegavhrairelyvpptaadlarrffaflnermelvng
interface signature	RQNKRSRSDR/RQNAKRSRSDR

Estimated binding specificities ?

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# IC=11.136 IC/col=1.114 n_of_columns=10

specificity:

A |  12   0  96   0   0   0   0   0   0  12
C |  60  96   0  96  96   0   0   0   0  12
G |  12   0   0   0   0  96  96   0  96  48
T |  12   0   0   0   0   0   0  96   0  24

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updated Fri Dec 15 14:20:09 2023