3dvo_AB : 3D-footprint complex

structure name	SGRAI WITH COGNATE DNA AND CALCIUM BOUND
reference	Dunten et al. 'Nucleic 36 5405 2008
source	Streptomyces griseus
experiment	X-ray (resolution=1.89, R-factor=?)
structural superfamily	Restriction endonuclease-like;
reference complex	6obj_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3dvo_A interface=30,35,91,95,151,243,245,246,247,248, pftysieatrnlatterciqdirnapvrnRstqfQlaqqnmlaytfgevipgfasagingmdyrdvigrpvenavtegthffrddfrvdsNakaKvagdifeivssavmwncaarwnslmvgegwrsqprysrptlspsprrqvavlnlpRsfdwvsllvpesqevieefraglrkdglglptstpdlavvvlpeefqndemwreeiagltrpnqillsgayqrlqgrvqpgeislavafkrSlRSDRlyqplyeanvmqlllegklgapkvefevhtlapegtnafvtyeaaslyglaevhrairelyvpptaadlarrffaflnermelvng > 3dvo_B interface=30,35,91,94,95,151,243,245,246,247,248, pftysieatrnlatterciqdirnapvrnRstqfQlaqqnmlaytfgevipgfasagingmdyrdvigrpvenavtegthffrddfrvdsNakAKvagdifeivssavmwncaarwnslmvgegwrsqprysrptlspsprrqvavlnlpRsfdwvsllvpesqevieefraglrkdglglptstpdlavvvlpeefqndemwreeiagltrpnqillsgayqrlqgrvqpgeislavafkrSlRSDRlyqplyeanvmqlllegklgapkvefevhtlapegtnafvtyeaaslyglaegavhrairelyvpptaadlarrffaflnermelvng
interface signature	RQNKRSRSDR/RQNAKRSRSDR

Estimated binding specificities ?

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# IC=8.538 IC/col=0.949 n_of_columns=9

specificity:

A |  15   0  60   0   0   0   0  13   0
C |  39  95  12  96  95   0   0  12   0
G |  15   1  12   0   1  96  96  11  95
T |  27   0  12   0   0   0   0  60   1

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updated Mon Jan 5 03:34:45 2026