3dzu_AD : 3D-footprint complex

structure name	INTACT PPAR GAMMA - RXR ALPHA NUCLEAR RECEPTOR COMPLEX ON DNA BOUND WITH BVT.13, 9-CIS RETINOIC ACID AND NCOA2 PEPTIDE
reference	Rastinejad et al. Nature 456 350 2008
source	HOMO SAPIENS
experiment	X-ray (resolution=3.20, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3dzu_A interface=22,25,29,30, khicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqeerqranedmpverileaeladpvtnicqaadkqlftlvewakriphfselplddqvillragwnelliasfshrsiavkdgillatglhvhrnsahsagvgaifdrvltelvskmrdmqmdktelgclraivlfnpdskglsnpaevealrekvyasleayckhkypeqpgrfaklllrlpalrsiglkclehlfffkligdtpidtflmeml > 3dzu_D interface=22,25,29,30,77, aiecrvcgdkasgfhygvhacEgcKgffRRtirlkliydrcdlncrihkksrnkcqycrfqkclavgmshnairfgRmpqaekekllaeissdidqlnpesadlralakhlydsyiksfpltkakarailtgkttdkspfviydmnslmmgedkikfevairifqgcqfrsveavqeiteyaksipgfvnldlndqvtllkygvheiiytmlaslmnkdgvlisegqgfmtreflkslrkpfgdfmepkfefavkfnalelddsdlaifiaviilsgdrpgllnvkpiediqdnllqalelqlklnhpessqlfakllqkmtdlrqivtehvqllqvikktetdmslhpllqeiykdly
interface signature	EKKR/EKRRR

Estimated binding specificities ?

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# IC=11.946 IC/col=0.703 n_of_columns=17

specificity:

A |   5   0  65   0   0  24  24   4  24  88   0   0  12  24  24   3   0
C |   3   0  14  96  96  24  24   7  24   0  96  96   7  24  24   5   3
G |   3  96  10   0   0  24  24   7  24   5   0   0  10  24  24   7   3
T |  85   0   7   0   0  24  24  78  24   3   0   0  67  24  24  81  90

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updated Mon Jan 5 03:36:24 2026