3dzu_AD : 3D-footprint complex

structure name	INTACT PPAR GAMMA - RXR ALPHA NUCLEAR RECEPTOR COMPLEX ON DNA BOUND WITH BVT.13, 9-CIS RETINOIC ACID AND NCOA2 PEPTIDE
reference	Rastinejad et al. Nature 456 350 2008
source	HOMO SAPIENS
experiment	X-ray (resolution=3.20, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3dzu_A interface=22,25,29,30, khicaicgdrssgkhygvyscEgcKgffKRtvrkdltytcrdnkdclidkrqrnrcqycryqkclamgmkreavqeerqranedmpverileaeladpvtnicqaadkqlftlvewakriphfselplddqvillragwnelliasfshrsiavkdgillatglhvhrnsahsagvgaifdrvltelvskmrdmqmdktelgclraivlfnpdskglsnpaevealrekvyasleayckhkypeqpgrfaklllrlpalrsiglkclehlfffkligdtpidtflmeml > 3dzu_D interface=22,25,29,30,77, aiecrvcgdkasgfhygvhacEgcKgffRRtirlkliydrcdlncrihkksrnkcqycrfqkclavgmshnairfgRmpqaekekllaeissdidqlnpesadlralakhlydsyiksfpltkakarailtgkttdkspfviydmnslmmgedkikfevairifqgcqfrsveavqeiteyaksipgfvnldlndqvtllkygvheiiytmlaslmnkdgvlisegqgfmtreflkslrkpfgdfmepkfefavkfnalelddsdlaifiaviilsgdrpgllnvkpiediqdnllqalelqlklnhpessqlfakllqkmtdlrqivtehvqllqvikktetdmslhpllqeiykdly
interface signature	EKKR/EKRRR

Estimated binding specificities ?

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# IC=12.995 IC/col=0.764 n_of_columns=17

specificity:

A |   0   0  50   0   0  24  24  10   3  96   0   0  18  24  24   2   0
C |   0   0   8  96  96  24  24   0   4   0  96  96  14  24  24   6   0
G |   0  96  22   0   0  24  24   4  26   0   0   0  20  24  24  12   0
T |  96   0  16   0   0  24  24  82  63   0   0   0  44  24  24  76  96

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updated Fri Dec 13 14:43:26 2024