interface graph thumbnail
legend  pdf

structure nameINTACT PPAR GAMMA - RXR ALPHA NUCLEAR RECEPTOR COMPLEX ON DNA BOUND WITH BVT.13, 9-CIS RETINOIC ACID AND NCOA2 PEPTIDE
(PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA)
referenceRastinejad et al. Nature 456 350 2008
sourceHOMO SAPIENS
experimentX-ray (resolution=3.20, R-factor=?)
structural superfamilyNuclear receptor ligand-binding domain;Glucocorticoid receptor-like DNA-binding domain;
sequence familyZinc finger, C4 type two domains; Ligandbinding domain of nuclear hormon;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureEKRRR

Estimated binding specificities ?

contactlogo
# IC=8.410 IC/col=0.765 n_of_columns=11 specificity:   
A |  69  96  82  24  24  82   0   0   0   4  82
C |   9   0   4  24  24   4   1   0   0  64   6
G |   9   0   6  24  24   6  91  96   0  19   4
T |   9   0   4  24  24   4   4   0  96   9   4
scan!

home
updated Thu Jan 8 21:23:47 2026