interface graph thumbnail
legend  pdf

structure nameINTACT PPAR GAMMA - RXR ALPHA NUCLEAR RECEPTOR COMPLEX ON DNA BOUND WITH BVT.13, 9-CIS RETINOIC ACID AND NCOA2 PEPTIDE
(PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR GAMMA)
referenceRastinejad et al. Nature 456 350 2008
sourceHOMO SAPIENS
experimentX-ray (resolution=3.20, R-factor=?)
structural superfamilyNuclear receptor ligand-binding domain;Glucocorticoid receptor-like DNA-binding domain;
sequence familyZinc finger, C4 type two domains; Ligandbinding domain of nuclear hormon;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureEKRRR

Estimated binding specificities ?

contactlogo
# IC=8.590 IC/col=0.781 n_of_columns=11 specificity:   
A |  67  96  84  24  24  86   0   0   0   9  84
C |   9   0   4  24  24   0   1   0   0  62   4
G |  11   0   4  24  24   6  91  96   0   6   4
T |   9   0   4  24  24   4   4   0  96  19   4
scan!

home
updated Sun Jun 28 06:58:40 2026