| structure name | INTACT PPAR GAMMA - RXR ALPHA NUCLEAR RECEPTOR COMPLEX ON DNA BOUND WITH GW9662, 9-CIS RETINOIC ACID AND NCOA2 PEPTIDE (RETINOIC ACID RECEPTOR RXR-ALPHA) |
| reference | Rastinejad et al. Nature 456 350 2008 |
| source | HOMO SAPIENS |
| experiment | X-ray (resolution=3.10, R-factor=?) |
| structural superfamily | Nuclear receptor ligand-binding domain;Glucocorticoid receptor-like DNA-binding domain; |
| sequence family | Ligandbinding domain of nuclear hormon; Zinc finger, C4 type two domains; |
| redundant complexes | 3dzu 3dzy |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | EKKR |
Estimated binding specificities ?
| contact |  |
A | 13 0 24 13 96 C | 13 0 24 54 0 G | 57 96 24 13 0 T | 13 0 24 16 0scan! |
Dendrogram of similar interfaces ?
matrix format--ECKG--KGRG---------- L +---3e00_A +-5 CAECKG--KGRG---------- L +------6 +---6l6q_B ! ! --ECKGAGKGRG---------- L ! +-----1hcq_E ! ----KGVT--RG---------- L ! +2c7a_B +--------------8 +-1 --EAKG--RTRTRT-------- ! ! +-2 +4umm_E ! ! ! ! --EAKG--RTRTRT-------- ! ! +------3 +2han_B ! ! ! ! ----KAVA--RA---------- L --9 +----7 +5e69_A ! ! --ECKGAG--RG---------- L ! ! +4ond_A ! +------4 --ETKGAT--RG---------- L ! +1lat_A ! --------------RAIAQTNA L +---------------------------6es3_K |
home
updated Thu Sep 12 17:05:06 2024