| structure name | CPRK OCPA DNA COMPLEX (Cyclic nucleotide-binding protein) |
| reference | Mol.Microbiol. 70 151 2008 |
| source | Desulfitobacterium hafniense |
| experiment | X-ray (resolution=1.80, R-factor=0.219) |
| structural superfamily | cAMP-binding domain-like;"Winged helix" DNA-binding domain; |
| sequence family | Cyclic nucleotidebinding domain; |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | HHVTSY |
Estimated binding specificities ?
| contact |  |
A | 9 0 67 96 9 0 C | 9 0 11 0 9 0 G | 11 0 9 0 11 96 T | 67 96 9 0 67 0scan! |
Related DNA sequences reported in the literature ?
| site | source | matches (E-value) |
|---|---|---|
| term: CPRK | ||
| TTAAT | PubMed | 3e6c_C(1.20e-07) |
| ATTAA | PubMed | 3e6c_C(1.20e-07) |
| ACTAA | PubMed | 3e6c_C(2.63e-03) |
| ATCAA | PubMed | 3e6c_C(2.85e-03) |
| TTGAT | PubMed | 3e6c_C(2.85e-03) |
Dendrogram of similar interfaces ?
matrix format----HTHTVATAST----YA L +------3e6c_C +-----------1 ----HT--STATSTRG---- L +----2 +------5lej_A ! ! ----ITRGECSCSGKG---- L --3 +------------------5i2d_R ! ETNTSCRGHC--RT--QA-- L +-----------------------5d4s_B |
home
updated Fri Sep 13 16:59:09 2024