3fmt_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF SEQA BOUND TO DNA
reference	Brendler et al.
source	ESCHERICHIA COLI
experiment	X-ray (resolution=2.98, R-factor=?)
structural superfamily	Replication modulator SeqA, C-terminal DNA-binding domain;Ribbon-helix-helix;
reference complex	3fmt_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3fmt_A interface=97,99,115,117,131,133,136, mktievddelysyiashtkhigesrsdilrrmlkfsaasqkpvktikdkvramrelllsdeyaeqkravnrfmlllstlysldaqafaeateslhgRtRvyfaadeqtllkngnQtKpkhvpgtpywvitNtNtgRkcsmiehimqsmqfpaeliekvcgti > 3fmt_B interface=94,110,126,128,131, mktievddelysyiashtkhigesrsdilrrmlkfkpvktikdkvramrelllsdeyaeqkravnrfmlllstlysldaqafaeateslhgrtRvyfaadeqtllkngnQtkpkhvpgtpywvitNtNtgRkcsmiehimqsmqfpaeliekvcgti
interface signature	RRQKNNR/RQNNR

Estimated binding specificities ?

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# IC=8.697 IC/col=0.580 n_of_columns=15

specificity:

A |   5  24   0  24   5  24  24   5   6   0  24   0  24  16   0
C |   6  24   0  24   6  24  24   5   5   0  24   0  24  65   0
G |  85  24   0  24  80  24  24  80  80  96  24   0  24  10   5
T |   0  24  96  24   5  24  24   6   5   0  24  96  24   5  91

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updated Tue Jul 29 20:22:04 2025