3fmt_EF : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF SEQA BOUND TO DNA
reference	Brendler et al.
source	ESCHERICHIA COLI
experiment	X-ray (resolution=2.98, R-factor=?)
structural superfamily	Replication modulator SeqA, C-terminal DNA-binding domain;Ribbon-helix-helix;
reference complex	3fmt_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3fmt_E interface=97,99,115,117,131,133,136, mktievddelysyiashtkhigesrsdilrrmlkfsaasqkpvktikdkvramrelllsdeyaeqkravnrfmlllstlysldaqafaeateslhgRtRvyfaadeqtllkngnQtKpkhvpgtpywvitNtNtgRkcsmiehimqsmqfpaeliekvcgti > 3fmt_F interface=94,110,126,128,131, mktievddelysyiashtkhigesrsdilrrmlkfkpvktikdkvramrelllsdeyaeqkravnrfmlllstlysldaqafaeateslhgrtRvyfaadeqtllkngnQtkpkhvpgtpywvitNtNtgRkcsmiehimqsmqfpaeliekvcgti
interface signature	RRQKNNR/RQNNR

Estimated binding specificities ?

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# IC=8.443 IC/col=0.563 n_of_columns=15

specificity:

A |   6  24   0  24   3  24  24   6   3   0  24   0  24  11   3
C |   3  24   0  24   3  24  24  15   6   0  24   0  24  61   6
G |  84  24   0  24  87  24  24  72  84  96  24   0  24   9   3
T |   3  24  96  24   3  24  24   3   3   0  24  96  24  15  84

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updated Fri Dec 13 14:48:38 2024