3fmt_EF : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF SEQA BOUND TO DNA
reference	Brendler et al.
source	ESCHERICHIA COLI
experiment	X-ray (resolution=2.98, R-factor=?)
structural superfamily	Replication modulator SeqA, C-terminal DNA-binding domain;Ribbon-helix-helix;
reference complex	3fmt_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3fmt_E interface=97,99,115,117,131,133,136, mktievddelysyiashtkhigesrsdilrrmlkfsaasqkpvktikdkvramrelllsdeyaeqkravnrfmlllstlysldaqafaeateslhgRtRvyfaadeqtllkngnQtKpkhvpgtpywvitNtNtgRkcsmiehimqsmqfpaeliekvcgti > 3fmt_F interface=94,110,126,128,131, mktievddelysyiashtkhigesrsdilrrmlkfkpvktikdkvramrelllsdeyaeqkravnrfmlllstlysldaqafaeateslhgrtRvyfaadeqtllkngnQtkpkhvpgtpywvitNtNtgRkcsmiehimqsmqfpaeliekvcgti
interface signature	RRQKNNR/RQNNR

Estimated binding specificities ?

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# IC=8.747 IC/col=0.583 n_of_columns=15

specificity:

A |   5  24   0  24   5  24  24   0   6   0  24   0  24  15   0
C |   5  24   0  24  20  24  24   5   0   0  24   0  24  50   0
G |  85  24   0  24  65  24  24  86  85  96  24   0  24  21   0
T |   1  24  96  24   6  24  24   5   5   0  24  96  24  10  96

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updated Wed Jun 24 15:35:41 2026