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structure nameSOLUTION NMR STRUCTURE OF THE C-TERMINAL DOMAIN OF CHICKEN GATA-1 BOUND TO DNA, 34 STRUCTURES
(ERYTHROID TRANSCRIPTION FACTOR GATA-1)
sourceGALLUS GALLUS
experimentNMR
structural superfamilyGlucocorticoid receptor-like DNA-binding domain;
sequence familyGATA zinc finger;
redundant complexes2gat 1gau 1gat
reference complex1gat_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureTLRNLLK

Estimated binding specificities ?

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# IC=4.434 IC/col=0.887 n_of_columns=5 specificity:   
A |  13  96  16   0   0
C |  16   0  13  96   0
G |  13   0  13   0   0
T |  54   0  54   0  96
scan!

Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: GATA-1
AGATAAPubMed3gat_A(1.24e-07), 1gat_A(1.40e-07), 1gau_A(3.54e-04), ... (total=4)
AGATCTPubMed3gat_A(3.59e-04), 1gat_A(3.94e-04), 1gau_A(3.59e-04), ... (total=4)
CGATAPubMed3gat_A(1.38e-04), 1gat_A(1.44e-04), 1gau_A(1.34e-04), ... (total=4)
GATAGPubMed3gat_A(1.38e-04), 1gat_A(1.44e-04), 1gau_A(1.34e-04), ... (total=4)
TGATAAPubMed3gat_A(3.65e-04), 1gat_A(3.79e-04), 1gau_A(3.54e-04), ... (total=4)
TGATAGPubMed3gat_A(3.65e-04), 1gat_A(3.79e-04), 1gau_A(3.54e-04), ... (total=4)
TTATCTPubMed3gat_A(1.24e-07), 1gat_A(1.40e-07), 1gau_A(3.54e-04), ... (total=4)

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updated Sat Aug 2 03:52:55 2025