structure name | SOLUTION NMR STRUCTURE OF THE C-TERMINAL DOMAIN OF CHICKEN GATA-1 BOUND TO DNA, 34 STRUCTURES (ERYTHROID TRANSCRIPTION FACTOR GATA-1) |
source | GALLUS GALLUS |
experiment | NMR |
structural superfamily | Glucocorticoid receptor-like DNA-binding domain; |
sequence family | GATA zinc finger; |
redundant complexes | 2gat 1gau 1gat |
reference complex | 1gat_A |
links to other resources | NAKB PDIdb DNAproDB |
protein sequence | |
interface signature | TLRNLLK |
Estimated binding specificities ?
readout + contact |
A | 13 96 16 0 0 C | 13 0 13 96 0 G | 16 0 13 0 0 T | 54 0 54 0 96scan! |
Related DNA sequences reported in the literature ?
site | source | matches (E-value) |
---|---|---|
term: GATA-1 | ||
AGATAA | PubMed | 3gat_A(1.24e-07), 1gat_A(1.40e-07), 1gau_A(3.54e-04), ... (total=4) |
AGATCT | PubMed | 3gat_A(3.59e-04), 1gat_A(3.94e-04), 1gau_A(3.59e-04), ... (total=4) |
CGATA | PubMed | 3gat_A(1.38e-04), 1gat_A(1.44e-04), 1gau_A(1.34e-04), ... (total=4) |
GATAG | PubMed | 3gat_A(1.38e-04), 1gat_A(1.44e-04), 1gau_A(1.34e-04), ... (total=4) |
TGATAA | PubMed | 3gat_A(3.65e-04), 1gat_A(3.79e-04), 1gau_A(3.54e-04), ... (total=4) |
TGATAG | PubMed | 3gat_A(3.65e-04), 1gat_A(3.79e-04), 1gau_A(3.54e-04), ... (total=4) |
TTATCT | PubMed | 3gat_A(1.24e-07), 1gat_A(1.40e-07), 1gau_A(3.54e-04), ... (total=4) |
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updated Thu Sep 12 17:12:05 2024