3kmd_ABCD : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE P53 CORE DOMAIN BOUND TO A FULL CONSENSUS SITE AS A SELF-ASSEMBLED TETRAMER
reference	Chen et al. Structure 18 246 2010
source	HOMO SAPIENS
experiment	X-ray (resolution=2.15, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3kmd_A interface=185,186,189, plsssvpsqktyqgsygfrlgflhsgtaksvtctyspalnkmfcqlaktcpvqlwvdstpppgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrntfrhsvvvpyeppevgsdcttihynymcnsscmggmnrrpiltiitledssgnllgrnsfevrvcACpgRdrrteeenlrk > 3kmd_B interface=29,30,157,185,186,189, plsssvpsqktyqgsygfrlgflhsgtaKSvtctyspalnkmfcqlaktcpvqlwvdstpppgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrntfrhsvvvpyeppevgsdcttihynymcnsscmggmnRrpiltiitledssgnllgrnsfevrvcACpgRdrrteeenlrk > 3kmd_C interface=29,157,185,186,189, plsssvpsqktyqgsygfrlgflhsgtaKsvtctyspalnkmfcqlaktcpvqlwvdstpppgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrntfrhsvvvpyeppevgsdcttihynymcnsscmggmnRrpiltiitledssgnllgrnsfevrvcACpgRdrrteeenlrk > 3kmd_D interface=29,30,185,186,189, plsssvpsqktyqgsygfrlgflhsgtaKSvtctyspalnkmfcqlaktcpvqlwvdstpppgtrvramaiykqsqhmtevvrrcphhercsdsdglappqhlirvegnlrveylddrntfrhsvvvpyeppevgsdcttihynymcnsscmggmnrrpiltiitledssgnllgrnsfevrvcACpgRdrrteeenlrk
interface signature	ACR/KSRACR/KRACR/KSACR

Estimated binding specificities ?

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# IC=18.550 IC/col=1.091 n_of_columns=17

specificity:

A |   8  24   0  78   0   0   0   0   0  96   0   0   0  96   0   0   8
C |  11  24  96   8   0   0  96  96   0   0   0   0  96   0   8   0  72
G |  69  24   0  10   0  96   0   0   0   0  96  96   0   0   8  96   8
T |   8  24   0   0  96   0   0   0  96   0   0   0   0   0  80   0   8

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updated Wed Jun 24 16:37:00 2026