3kov_IJ : 3D-footprint complex

structure name	STRUCTURE OF MEF2A BOUND TO DNA REVEALS A COMPLETELY FOLDED MADS- BOX/MEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS TRANSCRIPTION CO- FACTORS
reference	Jayathilaka et al. J.Mol.Biol. 397 520 2010
source	Homo sapiens
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	SRF-like;
reference complex	1c7u_A 7xuz_H
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3kov_I interface=2,22, gRkkiqitrimdernrqvtftKrkfglmkkayelsvlcdceialiifnssnklfqyastdmdkvllkyteynephesrtnsdivealnkk > 3kov_J interface=2,22, gRkkiqitrimdernrqvtftKrkfglmkkayelsvlcdceialiifnssnklfqyastdmdkvllkyteynephesrtnsdivealnkk
interface signature	RK/RK

Estimated binding specificities ?

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# IC=4.007 IC/col=0.401 n_of_columns=10

specificity:

A |   9   0  69  24  24  24  24  24  96  67
C |  67   0   9  24  24  24  24  24   0  11
G |   9   0   9  24  24  24  24  24   0   9
T |  11  96   9  24  24  24  24  24   0   9

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updated Mon Sep 9 18:28:34 2024