3kov_IJ : 3D-footprint complex

structure name	STRUCTURE OF MEF2A BOUND TO DNA REVEALS A COMPLETELY FOLDED MADS- BOX/MEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS TRANSCRIPTION CO- FACTORS
reference	Jayathilaka et al. J.Mol.Biol. 397 520 2010
source	Homo sapiens
experiment	X-ray (resolution=2.90, R-factor=?)
structural superfamily	SRF-like;
reference complex	7xuz_H
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3kov_I interface=2,22, gRkkiqitrimdernrqvtftKrkfglmkkayelsvlcdceialiifnssnklfqyastdmdkvllkyteynephesrtnsdivealnkk > 3kov_J interface=2,22, gRkkiqitrimdernrqvtftKrkfglmkkayelsvlcdceialiifnssnklfqyastdmdkvllkyteynephesrtnsdivealnkk
interface signature	RK/RK

Estimated binding specificities ?

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# IC=3.968 IC/col=0.397 n_of_columns=10

specificity:

A |   9   0  24  24  24  24  24   9  96   9
C |  11   0  24  24  24  24  24   9   0  11
G |   9   0  24  24  24  24  24  11   0  67
T |  67  96  24  24  24  24  24  67   0   9

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updated Fri Dec 13 15:48:52 2024