3ksb_ABCD : 3D-footprint complex

structure name	DETAILED STRUCTURAL INSIGHT INTO THE DNA CLEAVAGE COMPLEX OF TYPE IIA TOPOISOMERASES (RE-SEALED FORM)
reference	Sanderson et al.
source	STREPTOCOCCUS PNEUMONIAE
experiment	X-ray (resolution=3.50, R-factor=?)
structural superfamily	Type II DNA topoisomerase;
reference complex	8c41_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3ksb_A interface=26,78,168, niqnmsledimgerfgryskyiiqdRalpdirdglkpvqrrilysmnkdsntfdksyrksaksvgnimgnfhphgdsSiydamvrmsqnwknreilvemhgnngsmdgdppaamrytearlseiagyllqdiekktvpfawnfddtekeptvlpaafpnllvngstgIsagyatdipphnlaevidaavymidhptakidklmeflpgpdfptgaiiqgrdeikkayetgkgrvvvrskteiekqiviteipyeinkanlvkkiddvrvnnkvagiavrdesdrdglriaikdantelvlnylfkytdlqinynfnmvaidnftprqvgivpilssyiahrrevilarsrfdkekaekrlhiveglirvisildevialirasenkadakenlkvsydfteeqaeaivtlqlyrltntdvvvlqeeeaelrekiamlaaiigdertmynlmkkelrevkkkfatprlssle > 3ksb_B interface=26,78,168, niqnmsledimgerfgryskyiiqdRalpdirdglkpvqrrilysmnkdsntfdksyrksaksvgnimgnfhphgdsSiydamvrmsqnwknreilvemhgnngsmdgdppaamrytearlseiagyllqdiekktvpfawnfddtekeptvlpaafpnllvngstgIsagyatdipphnlaevidaavymidhptakidklmeflpgpdfptgaiiqgrdeikkayetgkgrvvvrskteiekqiviteipyeinkanlvkkiddvrvnnkvagiavrdesdrdglriaikdantelvlnylfkytdlqinynfnmvaidnftprqvgivpilssyiahrrevilarsrfdkekaekrlhiveglirvisildevialirasenkadakenlkvsydfteeqaeaivtlqlyrltntdvvvlqeeeaelrekiamlaaiigdertmynlmkkelrevkkkfatprlssle > 3ksb_C interface=44, kltpaqsknpaknelylvegdsaggsakqgrdrkfqailplrgKvintakadilkneeintmiytigagvdfsieanydkiiimtdadtdgahiqtllltffyrymrplveaghvyialpplykmskkkeevayawtdgeleelrkqfgkgatlqrykglgemnadqlwettmnpetrtlirvtiedlaraerrvnvlmgdkveprrkwiednvkft > 3ksb_D interface=44, kltpaqsknpaknelylvegdsaggsakqgrdrkfqailplrgKvintakadilkneeintmiytigagvdfsieanydkiiimtdadtdgahiqtllltffyrymrplveaghvyialpplykmskkkeevayawtdgeleelrkqfatlqrykglgemnadqlwettmnpetrtlirvtiedlaraerrvnvlmgdkveprrkwiednvkft
interface signature	RSI/RSI/K/K

Estimated binding specificities ?

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# IC=8.279 IC/col=0.591 n_of_columns=14

specificity:

A |   0   0   5  55  15  24  24  24  24  75   6  24   0  96
C |   0   0  85  16  15  24  24  24  24   0   5  24  96   0
G |   0  96   1  10   5  24  24  24  24  16   5  24   0   0
T |  96   0   5  15  61  24  24  24  24   5  80  24   0   0

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updated Wed Jun 24 16:39:27 2026