3ksb_ABCD : 3D-footprint complex

structure name	DETAILED STRUCTURAL INSIGHT INTO THE DNA CLEAVAGE COMPLEX OF TYPE IIA TOPOISOMERASES (RE-SEALED FORM)
reference	Sanderson et al.
source	STREPTOCOCCUS PNEUMONIAE
experiment	X-ray (resolution=3.50, R-factor=?)
structural superfamily	Type II DNA topoisomerase;
reference complex	8c41_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3ksb_A interface=26,78,168, niqnmsledimgerfgryskyiiqdRalpdirdglkpvqrrilysmnkdsntfdksyrksaksvgnimgnfhphgdsSiydamvrmsqnwknreilvemhgnngsmdgdppaamrytearlseiagyllqdiekktvpfawnfddtekeptvlpaafpnllvngstgIsagyatdipphnlaevidaavymidhptakidklmeflpgpdfptgaiiqgrdeikkayetgkgrvvvrskteiekqiviteipyeinkanlvkkiddvrvnnkvagiavrdesdrdglriaikdantelvlnylfkytdlqinynfnmvaidnftprqvgivpilssyiahrrevilarsrfdkekaekrlhiveglirvisildevialirasenkadakenlkvsydfteeqaeaivtlqlyrltntdvvvlqeeeaelrekiamlaaiigdertmynlmkkelrevkkkfatprlssle > 3ksb_B interface=26,78,168, niqnmsledimgerfgryskyiiqdRalpdirdglkpvqrrilysmnkdsntfdksyrksaksvgnimgnfhphgdsSiydamvrmsqnwknreilvemhgnngsmdgdppaamrytearlseiagyllqdiekktvpfawnfddtekeptvlpaafpnllvngstgIsagyatdipphnlaevidaavymidhptakidklmeflpgpdfptgaiiqgrdeikkayetgkgrvvvrskteiekqiviteipyeinkanlvkkiddvrvnnkvagiavrdesdrdglriaikdantelvlnylfkytdlqinynfnmvaidnftprqvgivpilssyiahrrevilarsrfdkekaekrlhiveglirvisildevialirasenkadakenlkvsydfteeqaeaivtlqlyrltntdvvvlqeeeaelrekiamlaaiigdertmynlmkkelrevkkkfatprlssle > 3ksb_C interface=44, kltpaqsknpaknelylvegdsaggsakqgrdrkfqailplrgKvintakadilkneeintmiytigagvdfsieanydkiiimtdadtdgahiqtllltffyrymrplveaghvyialpplykmskkkeevayawtdgeleelrkqfgkgatlqrykglgemnadqlwettmnpetrtlirvtiedlaraerrvnvlmgdkveprrkwiednvkft > 3ksb_D interface=44, kltpaqsknpaknelylvegdsaggsakqgrdrkfqailplrgKvintakadilkneeintmiytigagvdfsieanydkiiimtdadtdgahiqtllltffyrymrplveaghvyialpplykmskkkeevayawtdgeleelrkqfatlqrykglgemnadqlwettmnpetrtlirvtiedlaraerrvnvlmgdkveprrkwiednvkft
interface signature	RSI/RSI/K/K

Estimated binding specificities ?

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# IC=8.490 IC/col=0.606 n_of_columns=14

specificity:

A |   0   0  24  85  15  24  24  24  24  60  15   5   0  96
C |   0   0  24   5   0  24  24  24  24  10  16   0  96   0
G |   0  96  24   0  11  24  24  24  24  11  10  90   0   0
T |  96   0  24   6  70  24  24  24  24  15  55   1   0   0

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updated Mon Jan 5 04:49:37 2026