3ksb_ABCD : 3D-footprint complex

structure name	DETAILED STRUCTURAL INSIGHT INTO THE DNA CLEAVAGE COMPLEX OF TYPE IIA TOPOISOMERASES (RE-SEALED FORM)
reference	Sanderson et al.
source	STREPTOCOCCUS PNEUMONIAE
experiment	X-ray (resolution=3.50, R-factor=?)
structural superfamily	Type II DNA topoisomerase;
reference complex	3ksb_B 3ksb_C
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 3ksb_A interface=26,78,168, niqnmsledimgerfgryskyiiqdRalpdirdglkpvqrrilysmnkdsntfdksyrksaksvgnimgnfhphgdsSiydamvrmsqnwknreilvemhgnngsmdgdppaamrytearlseiagyllqdiekktvpfawnfddtekeptvlpaafpnllvngstgIsagyatdipphnlaevidaavymidhptakidklmeflpgpdfptgaiiqgrdeikkayetgkgrvvvrskteiekqiviteipyeinkanlvkkiddvrvnnkvagiavrdesdrdglriaikdantelvlnylfkytdlqinynfnmvaidnftprqvgivpilssyiahrrevilarsrfdkekaekrlhiveglirvisildevialirasenkadakenlkvsydfteeqaeaivtlqlyrltntdvvvlqeeeaelrekiamlaaiigdertmynlmkkelrevkkkfatprlssle > 3ksb_B interface=26,78,168, niqnmsledimgerfgryskyiiqdRalpdirdglkpvqrrilysmnkdsntfdksyrksaksvgnimgnfhphgdsSiydamvrmsqnwknreilvemhgnngsmdgdppaamrytearlseiagyllqdiekktvpfawnfddtekeptvlpaafpnllvngstgIsagyatdipphnlaevidaavymidhptakidklmeflpgpdfptgaiiqgrdeikkayetgkgrvvvrskteiekqiviteipyeinkanlvkkiddvrvnnkvagiavrdesdrdglriaikdantelvlnylfkytdlqinynfnmvaidnftprqvgivpilssyiahrrevilarsrfdkekaekrlhiveglirvisildevialirasenkadakenlkvsydfteeqaeaivtlqlyrltntdvvvlqeeeaelrekiamlaaiigdertmynlmkkelrevkkkfatprlssle > 3ksb_C interface=44, kltpaqsknpaknelylvegdsaggsakqgrdrkfqailplrgKvintakadilkneeintmiytigagvdfsieanydkiiimtdadtdgahiqtllltffyrymrplveaghvyialpplykmskkkeevayawtdgeleelrkqfgkgatlqrykglgemnadqlwettmnpetrtlirvtiedlaraerrvnvlmgdkveprrkwiednvkft > 3ksb_D interface=44, kltpaqsknpaknelylvegdsaggsakqgrdrkfqailplrgKvintakadilkneeintmiytigagvdfsieanydkiiimtdadtdgahiqtllltffyrymrplveaghvyialpplykmskkkeevayawtdgeleelrkqfatlqrykglgemnadqlwettmnpetrtlirvtiedlaraerrvnvlmgdkveprrkwiednvkft
interface signature	RSI/RSI/K/K

Estimated binding specificities ?

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# IC=8.180 IC/col=0.584 n_of_columns=14

specificity:

A |   0   0   5  55  15  24  24  24  24  65   5  24   0  96
C |   0   0  85  15  16  24  24  24  24  10   5  24  96   0
G |   0  96   6  11   0  24  24  24  24  15   5  24   0   0
T |  96   0   0  15  65  24  24  24  24   6  81  24   0   0

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updated Mon Sep 9 18:29:32 2024