interface graph thumbnail
legend  pdf

structure nameAN EXTRAORDINARY MECHANISM OF DNA PERTURBATION EXHIBITED BY THE RARE- CUTTING HNH RESTRICTION ENDONUCLEASE PACI
(restriction endonuclease PacI)
referenceStoddard et al. Structure 18 734 2010
sourcePseudomonas alcaligenes
experimentX-ray (resolution=1.97, R-factor=0.186)
structural superfamilyFYVE/PHD zinc finger;
reference complex3m7k_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSMQNYNKERNPRYFR

Estimated binding specificities ?

contactlogo
# IC=5.330 IC/col=1.333 n_of_columns=4 specificity:   
A |   0  96  96   0
C |   0   0   0   0
G |   0   0   0  96
T |  96   0   0   0
scan!

home
updated Sat Aug 2 04:19:17 2025