| structure name | STRUCTURE OF THE LARGE FRAGMENT OF THERMUS AQUATICUS DNA POLYMERASE I IN COMPLEX WITH A BLUNT-ENDED DNA AND DDATP (DNA polymerase I, thermostable) |
| reference | Diederichs et al. 'Embo 29 1738 2010 |
| source | Thermus aquaticus |
| experiment | X-ray (resolution=2.19, R-factor=0.186) |
| structural superfamily | DNA/RNA polymerases;Ribonuclease H-like; |
| sequence family | DNA polymerase family A; Taq polymerase, exonuclease; |
| redundant complexes | 4ktq 3ktq 1qsy 1qss 1tau 3lwl 1qtm 2ktq |
| reference complex | 6fbc_A |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | KTYRNNRH |
Estimated binding specificities ?
| contact |  |
A | 16 13 0 0 C | 13 57 0 96 G | 54 13 96 0 T | 13 13 0 0scan! |
Dendrogram of similar interfaces ?
matrix format--------------------------KC--YG------RGNGNGRC------YTMTRT--------------------QT--HG L +3lwm_A +-1 --------------DTKT--------KC----------RG--NTRGAAFA--YCIA--LAQTNANT------------QC---- L +------2 +2hhv_A ! ! LCNGKGYGMGRCEG------------------SGHGVC---------------------------------------------- +--------------3 +-1kln_A ! ! ----------------------------KT--------RTNG----------YA------------------------QA---- +----4 +--------1x9m_A ! ! ------------------ATYTDGKG------------------------TTYT--------------------------HT-- L --5 +-----------------------1msw_D ! ------------------------------------------------------------------SCTAKTVCHTKG------ L +----------------------------1je8_F |
home
updated Thu Sep 12 17:36:56 2024