| structure name | CRYSTAL STRUCTURE OF THE LARGE FRAGMENT OF DNA POLYMERASE I FROM THERMUS AQUATICUS IN A CLOSED TERNARY COMPLEX WITH TRAPPED 4'- ETHYLATED DTTP (DNA polymerase I, thermostable) |
| reference | Diederichs et al. Angew.Chem.Int.Ed.Engl. 49 5181 2010 |
| source | Thermus aquaticus |
| experiment | X-ray (resolution=2.00, R-factor=0.182) |
| structural superfamily | DNA/RNA polymerases;Ribonuclease H-like; |
| sequence family | DNA polymerase family A; Taq polymerase, exonuclease; |
| redundant complexes | 3m8s 4ktq 3lwm 3ktq 1qsy 1qss 1tau 3lwl 1qtm 2ktq |
| reference complex | 6fbc_A |
| links to other resources | NAKB  PDIdb DNAproDB |
| protein sequence | |
| interface signature | KTRNNH |
Estimated binding specificities ?
| contact |  |
A | 9 9 0 9 C | 9 67 0 69 G | 69 11 96 9 T | 9 9 0 9scan! |
Dendrogram of similar interfaces ?
matrix format------------IASAAAVAAA--------KC----------RG--NGNG--TAFA--YAMASAHARA--QAEA--RANGQG--HG L +---3m8r_A +----2 ----------------DT--KT--------KC----------RG----NTRGAAFA--YCIA------LAQTNANT----QC---- L ! ! +-2hhv_A +--------------3 +-1 LCNGKGYGMGEG----------------------SGHGVC---------------------------------------------- ! ! +-1kln_A --4 ! --------------------------------KT--------RT--NG----------YA--------------------QA---- ! +--------1x9m_A ! ----------------------ATYTDGKG----------RCRCYC----------TTYT----------------------HT-- L +-----------------------1msw_D |
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updated Mon Dec 18 08:27:31 2023